SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2084338Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. 2084960Family c.1.9.0: automated matches [191327] (1 protein)
    not a true family
  6. 2084961Protein automated matches [190150] (25 species)
    not a true protein

Species:

  1. 2084962Acinetobacter baumannii [TaxId:480119] [226540] (1 PDB entry)
  2. 2084964Arthrobacter aurescens [TaxId:290340] [189973] (1 PDB entry)
  3. 2084967Bordetella bronchiseptica [TaxId:518] [255848] (2 PDB entries)
    1. Domains for 3gip:
      1. 2084968Domain d3gipa2: 3gip A:61-418 [246305]
        Other proteins in same PDB: d3gipa1, d3gipa3, d3gipb1, d3gipb3
        automated match to d1rk6a3
        complexed with acy, fmt, zn
      2. 2084969Domain d3gipb2: 3gip B:61-418 [246308]
        Other proteins in same PDB: d3gipa1, d3gipa3, d3gipb1, d3gipb3
        automated match to d1rk6a3
        complexed with acy, fmt, zn
    2. Domains for 3giq:
      1. 2084970Domain d3giqa2: 3giq A:61-418 [246311]
        Other proteins in same PDB: d3giqa1, d3giqa3, d3giqb1, d3giqb3
        automated match to d1rk6a3
        complexed with g01, zn
      2. 2084971Domain d3giqb2: 3giq B:61-418 [246314]
        Other proteins in same PDB: d3giqa1, d3giqa3, d3giqb1, d3giqb3
        automated match to d1rk6a3
        complexed with g01, zn
  4. 2084972Burkholderia cenocepacia [TaxId:216591] [256356] (1 PDB entry)
  5. 2084975Campylobacter jejuni [TaxId:192222] [226030] (1 PDB entry)
  6. 2084978Caulobacter vibrioides [TaxId:190650] [255551] (1 PDB entry)
  7. 2084982Deinococcus radiodurans [TaxId:1299] [188838] (1 PDB entry)
  8. 2084984Escherichia coli K-12 [TaxId:83333] [186875] (1 PDB entry)
  9. 2084986Escherichia coli [TaxId:83333] [257011] (1 PDB entry)
  10. 2084995Geobacillus kaustophilus [TaxId:1462] [189526] (16 PDB entries)
    1. Domain for 3ojg:
    2. Domains for 3orw:
      1. 2085023Domain d3orwa_: 3orw A: [200157]
        automated match to d3orwb_
        complexed with co
      2. 2085024Domain d3orwb_: 3orw B: [196165]
        automated match to d3ojga_
        complexed with co
    3. Domains for 3tn3:
      1. 2085000Domain d3tn3a_: 3tn3 A: [249953]
        automated match to d3orwa_
        complexed with co
      2. 2085001Domain d3tn3b_: 3tn3 B: [249954]
        automated match to d3orwa_
        complexed with co
    4. Domains for 3tn4:
      1. 2084996Domain d3tn4a_: 3tn4 A: [249955]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2084997Domain d3tn4b_: 3tn4 B: [249956]
        automated match to d3orwa_
        complexed with co; mutant
    5. Domains for 3tn5:
      1. 2085004Domain d3tn5a_: 3tn5 A: [249957]
        automated match to d3orwa_
        complexed with co, po4; mutant
      2. 2085005Domain d3tn5b_: 3tn5 B: [249958]
        automated match to d3orwa_
        complexed with co, po4; mutant
    6. Domains for 3tn6:
      1. 2085002Domain d3tn6a_: 3tn6 A: [249959]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2085003Domain d3tn6b_: 3tn6 B: [249960]
        automated match to d3orwa_
        complexed with co; mutant
    7. Domains for 3tnb:
      1. 2084998Domain d3tnba_: 3tnb A: [249962]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2084999Domain d3tnbb_: 3tnb B: [249963]
        automated match to d3orwa_
        complexed with co; mutant
    8. Domains for 4h9t:
      1. 2085011Domain d4h9ta_: 4h9t A: [193071]
        automated match to d3ojga_
        complexed with fe, hl4, mn; mutant
      2. 2085012Domain d4h9tb_: 4h9t B: [202395]
        automated match to d4h9ta_
        complexed with fe, hl4, mn; mutant
    9. Domains for 4h9u:
      1. 2085009Domain d4h9ua_: 4h9u A: [202396]
        automated match to d4h9ub_
        complexed with fe, oh, zn
      2. 2085010Domain d4h9ub_: 4h9u B: [193074]
        automated match to d3ojga_
        complexed with fe, oh, zn
    10. Domains for 4h9v:
      1. 2085007Domain d4h9va_: 4h9v A: [193076]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085008Domain d4h9vb_: 4h9v B: [193075]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
    11. Domains for 4h9x:
      1. 2085017Domain d4h9xa_: 4h9x A: [193073]
        automated match to d3ojga_
        complexed with fe, hl4, oh, zn; mutant
      2. 2085018Domain d4h9xb_: 4h9x B: [202397]
        automated match to d4h9xa_
        complexed with fe, hl4, oh, zn; mutant
    12. Domains for 4h9y:
      1. 2085013Domain d4h9ya_: 4h9y A: [193070]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085014Domain d4h9yb_: 4h9y B: [202398]
        automated match to d4h9ya_
        complexed with fe, oh, zn; mutant
    13. Domains for 4h9z:
      1. 2085025Domain d4h9za_: 4h9z A: [222449]
        automated match to d4h9ya_
        complexed with fe, mn; mutant
      2. 2085026Domain d4h9zb_: 4h9z B: [222450]
        automated match to d4h9ya_
        complexed with fe, mn; mutant
    14. Domains for 4ha0:
      1. 2085015Domain d4ha0a_: 4ha0 A: [193078]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085016Domain d4ha0b_: 4ha0 B: [202399]
        automated match to d4ha0a_
        complexed with fe, oh, zn; mutant
    15. Domains for 4wvx:
      1. 2085019Domain d4wvxa_: 4wvx A: [279353]
        automated match to d3tn5a_
        complexed with co, edo
      2. 2085020Domain d4wvxb_: 4wvx B: [279352]
        automated match to d3tn5a_
        complexed with co, edo
    16. Domains for 5ch9:
      1. 2085021Domain d5ch9a_: 5ch9 A: [276653]
        automated match to d3tn5a_
        complexed with co; mutant
      2. 2085022Domain d5ch9b_: 5ch9 B: [276652]
        automated match to d3tn5a_
        complexed with co; mutant
  11. 2085027Geobacillus stearothermophilus [TaxId:272567] [188974] (2 PDB entries)
    1. Domains for 3f4c:
      1. 2085028Domain d3f4ca1: 3f4c A:101-423 [175456]
        Other proteins in same PDB: d3f4ca2, d3f4cb2
        automated match to d2d2ga1
        complexed with co, gol
      2. 2085029Domain d3f4cb1: 3f4c B:101-423 [175457]
        Other proteins in same PDB: d3f4ca2, d3f4cb2
        automated match to d2d2ga1
        complexed with co, gol
    2. Domains for 3f4d:
      1. 2085030Domain d3f4da1: 3f4d A:3-325 [175458]
        Other proteins in same PDB: d3f4da2, d3f4db2
        automated match to d2d2ga1
        complexed with co
      2. 2085031Domain d3f4db1: 3f4d B:3-325 [175459]
        Other proteins in same PDB: d3f4da2, d3f4db2
        automated match to d2d2ga1
        complexed with co
  12. 2085032Human (Homo sapiens) [TaxId:9606] [189102] (6 PDB entries)
    1. Domain for 2wm1:
    2. Domains for 2y1h:
      1. 2085040Domain d2y1ha1: 2y1h A:5-272 [196394]
        Other proteins in same PDB: d2y1ha2
        automated match to d2gzxa_
        complexed with edo, ni, po4, zn
      2. 2085041Domain d2y1hb_: 2y1h B: [196393]
        Other proteins in same PDB: d2y1ha2
        automated match to d2gzxa_
        complexed with edo, ni, po4, zn
    3. Domains for 4igm:
      1. 2085048Domain d4igma_: 4igm A: [256777]
        automated match to d2wm1a_
        complexed with zn
      2. 2085049Domain d4igmb_: 4igm B: [256778]
        automated match to d2wm1a_
        complexed with zn
      3. 2085050Domain d4igmc_: 4igm C: [256779]
        automated match to d2wm1a_
        complexed with zn
      4. 2085051Domain d4igmd_: 4igm D: [262719]
        automated match to d4ofca_
        complexed with zn
      5. 2085052Domain d4igme_: 4igm E: [262720]
        automated match to d4ofca_
        complexed with zn
      6. 2085053Domain d4igmf_: 4igm F: [262721]
        automated match to d4ofca_
        complexed with zn
    4. Domains for 4ign:
      1. 2085042Domain d4igna_: 4ign A: [256780]
        automated match to d2wm1a_
        complexed with zn; mutant
      2. 2085043Domain d4ignb_: 4ign B: [261074]
        automated match to d2wm1a_
        complexed with zn; mutant
      3. 2085044Domain d4ignc_: 4ign C: [261072]
        automated match to d2wm1a_
        complexed with zn; mutant
      4. 2085045Domain d4ignd_: 4ign D: [261071]
        automated match to d2wm1a_
        complexed with zn; mutant
      5. 2085046Domain d4igne_: 4ign E: [261070]
        automated match to d2wm1a_
        complexed with zn; mutant
      6. 2085047Domain d4ignf_: 4ign F: [261073]
        automated match to d2wm1a_
        complexed with zn; mutant
    5. Domains for 4ih3:
      1. 2085054Domain d4ih3a_: 4ih3 A: [261210]
        automated match to d2wm1a_
        complexed with pdc, zn
      2. 2085055Domain d4ih3b_: 4ih3 B: [298379]
        automated match to d4igna_
        complexed with pdc, zn
      3. 2085056Domain d4ih3c_: 4ih3 C: [298380]
        automated match to d4igna_
        complexed with pdc, zn
      4. 2085057Domain d4ih3d_: 4ih3 D: [298381]
        automated match to d4igna_
        complexed with pdc, zn
      5. 2085058Domain d4ih3e_: 4ih3 E: [298382]
        automated match to d4igna_
        complexed with pdc, zn
      6. 2085059Domain d4ih3f_: 4ih3 F: [298383]
        automated match to d4igna_
        complexed with pdc, zn
    6. Domains for 4ofc:
      1. 2085034Domain d4ofca_: 4ofc A: [261117]
        automated match to d2wm1a_
        complexed with zn
      2. 2085035Domain d4ofcb_: 4ofc B: [261233]
        automated match to d2wm1a_
        complexed with zn
      3. 2085036Domain d4ofcc_: 4ofc C: [300016]
        automated match to d4ofca_
        complexed with zn
      4. 2085037Domain d4ofcd_: 4ofc D: [261118]
        automated match to d2wm1a_
        complexed with zn
      5. 2085038Domain d4ofce_: 4ofc E: [300017]
        automated match to d4ofca_
        complexed with zn
      6. 2085039Domain d4ofcf_: 4ofc F: [300018]
        automated match to d4ofca_
        complexed with zn
  13. 2085060Lactobacillus acidophilus [TaxId:1579] [225736] (1 PDB entry)
  14. 2085065Listeria monocytogenes [TaxId:267410] [189815] (1 PDB entry)
  15. 2085072Mycobacterium tuberculosis [TaxId:1773] [229823] (1 PDB entry)
  16. 2085074Novosphingobium aromaticivorans [TaxId:279238] [267952] (6 PDB entries)
    1. Domains for 4inf:
      1. 2085079Domain d4infa_: 4inf A: [266458]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      2. 2085080Domain d4infb_: 4inf B: [266459]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      3. 2085081Domain d4infc_: 4inf C: [266460]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      4. 2085082Domain d4infd_: 4inf D: [266461]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
    2. Domains for 4ing:
      1. 2085091Domain d4inga_: 4ing A: [307545]
        automated match to d4infa_
        complexed with 1df, ca, cl
      2. 2085092Domain d4ingb_: 4ing B: [307546]
        automated match to d4infa_
        complexed with 1df, ca, cl
    3. Domains for 4qrn:
      1. 2085075Domain d4qrna1: 4qrn A:1-351 [300543]
        Other proteins in same PDB: d4qrna2
        automated match to d4infa_
        complexed with 1df, act, cl, gol, mn
      2. 2085076Domain d4qrnb_: 4qrn B: [267339]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
      3. 2085077Domain d4qrnc_: 4qrn C: [267340]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
      4. 2085078Domain d4qrnd_: 4qrn D: [267341]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
    4. Domains for 4qs5:
      1. 2085087Domain d4qs5a_: 4qs5 A: [267342]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      2. 2085088Domain d4qs5b_: 4qs5 B: [267343]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      3. 2085089Domain d4qs5c_: 4qs5 C: [267344]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      4. 2085090Domain d4qs5d_: 4qs5 D: [267345]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
    5. Domains for 4qs6:
      1. 2085085Domain d4qs6a_: 4qs6 A: [267346]
        automated match to d3s4ta_
        complexed with 1df, cl, gol; mutant
      2. 2085086Domain d4qs6b_: 4qs6 B: [267347]
        automated match to d3s4ta_
        complexed with 1df, cl, gol; mutant
    6. Domains for 4qtg:
      1. 2085083Domain d4qtga_: 4qtg A: [267365]
        automated match to d3s4ta_
        complexed with gol, mn
      2. 2085084Domain d4qtgb_: 4qtg B: [267366]
        automated match to d3s4ta_
        complexed with gol, mn
  17. 2085093Pseudomonas putida [TaxId:160488] [226114] (1 PDB entry)
  18. 2085095Salmonella enterica [TaxId:99287] [311298] (1 PDB entry)
  19. 2085100Salmonella typhimurium [TaxId:90371] [189010] (1 PDB entry)
  20. 2085104Staphylococcus aureus [TaxId:196620] [187776] (1 PDB entry)
  21. 2085107Sulfolobus islandicus [TaxId:426118] [193063] (1 PDB entry)
  22. 2085109Sulfolobus solfataricus [TaxId:2287] [188418] (10 PDB entries)
    1. Domains for 2vc5:
      1. 2085138Domain d2vc5a_: 2vc5 A: [168450]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      2. 2085139Domain d2vc5b_: 2vc5 B: [168451]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      3. 2085140Domain d2vc5c_: 2vc5 C: [168452]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      4. 2085141Domain d2vc5d_: 2vc5 D: [168453]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
    2. Domains for 2vc7:
      1. 2085126Domain d2vc7a_: 2vc7 A: [168456]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      2. 2085127Domain d2vc7b_: 2vc7 B: [168457]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      3. 2085128Domain d2vc7c_: 2vc7 C: [168458]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      4. 2085129Domain d2vc7d_: 2vc7 D: [168459]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
    3. Domains for 3uf9:
      1. 2085146Domain d3uf9a_: 3uf9 A: [193156]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      2. 2085147Domain d3uf9b_: 3uf9 B: [193155]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      3. 2085148Domain d3uf9c_: 3uf9 C: [200979]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      4. 2085149Domain d3uf9d_: 3uf9 D: [200980]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
    4. Domains for 4ker:
      1. 2085134Domain d4kera_: 4ker A: [228062]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
      2. 2085135Domain d4kerb_: 4ker B: [235147]
        automated match to d4kerd_
        complexed with co, edo, fe2, gol, peg
      3. 2085136Domain d4kerc_: 4ker C: [235145]
        automated match to d4kerd_
        complexed with co, edo, fe2, gol, peg
      4. 2085137Domain d4kerd_: 4ker D: [228061]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
    5. Domains for 4kes:
      1. 2085122Domain d4kesa_: 4kes A: [235149]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      2. 2085123Domain d4kesb_: 4kes B: [235148]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      3. 2085124Domain d4kesc_: 4kes C: [235143]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      4. 2085125Domain d4kesd_: 4kes D: [228060]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
    6. Domains for 4ket:
      1. 2085114Domain d4keta_: 4ket A: [228059]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg, pg4
      2. 2085115Domain d4ketb_: 4ket B: [235146]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, peg, pg4
      3. 2085116Domain d4ketc_: 4ket C: [235144]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, peg, pg4
      4. 2085117Domain d4ketd_: 4ket D: [228058]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg, pg4
    7. Domains for 4keu:
      1. 2085130Domain d4keua_: 4keu A: [228057]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
      2. 2085131Domain d4keub_: 4keu B: [235150]
        automated match to d4keud_
        complexed with co, edo, fe2, gol
      3. 2085132Domain d4keuc_: 4keu C: [235151]
        automated match to d4keud_
        complexed with co, edo, fe2, gol
      4. 2085133Domain d4keud_: 4keu D: [228056]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
    8. Domains for 4kev:
      1. 2085142Domain d4keva_: 4kev A: [228064]
        automated match to d2vc7a_
        complexed with co, fe2
      2. 2085143Domain d4kevb_: 4kev B: [235152]
        automated match to d4kevd_
        complexed with co, fe2
      3. 2085144Domain d4kevc_: 4kev C: [235153]
        automated match to d4kevd_
        complexed with co, fe2
      4. 2085145Domain d4kevd_: 4kev D: [228063]
        automated match to d2vc7a_
        complexed with co, fe2
    9. Domains for 4kez:
      1. 2085110Domain d4keza_: 4kez A: [235155]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      2. 2085111Domain d4kezb_: 4kez B: [235156]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      3. 2085112Domain d4kezc_: 4kez C: [235154]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      4. 2085113Domain d4kezd_: 4kez D: [228066]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
    10. Domains for 4kf1:
      1. 2085118Domain d4kf1a_: 4kf1 A: [235157]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      2. 2085119Domain d4kf1b_: 4kf1 B: [235158]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      3. 2085120Domain d4kf1c_: 4kf1 C: [235159]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      4. 2085121Domain d4kf1d_: 4kf1 D: [235160]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
  23. 2085150Vulcanisaeta moutnovskia [TaxId:985053] [269342] (3 PDB entries)
    1. Domains for 4rdy:
      1. 2085153Domain d4rdya_: 4rdy A: [269346]
        automated match to d4g2da_
        complexed with 3m5, co, gol, so4
      2. 2085154Domain d4rdyb_: 4rdy B: [269343]
        automated match to d4g2da_
        complexed with 3m5, co, gol, so4
    2. Domains for 4rdz:
      1. 2085151Domain d4rdza1: 4rdz A:1-314 [269344]
        Other proteins in same PDB: d4rdza2, d4rdzb2
        automated match to d4g2da_
        complexed with co, gol, myr
      2. 2085152Domain d4rdzb1: 4rdz B:1-315 [269345]
        Other proteins in same PDB: d4rdza2, d4rdzb2
        automated match to d4g2da_
        complexed with co, gol, myr
    3. Domain for 4re0:
  24. 2288113Yersinia pestis [TaxId:632] [331414] (1 PDB entry)
  25. 2290254Vibrio cholerae [TaxId:666] [333555] (1 PDB entry)

More info for Protein automated matches from c.1.9.0: automated matches

Timeline for Protein automated matches from c.1.9.0: automated matches: