SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2144291Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 2144292Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 2144293Family c.94.1.1: Phosphate binding protein-like [53851] (45 protein domains)
  6. 2145191Protein automated matches [190140] (25 species)
    not a true protein

Species:

  1. 2145192Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226716] (1 PDB entry)
  2. 2145194Bordetella pertussis [TaxId:257313] [187275] (2 PDB entries)
    1. Domain for 2ows:
    2. Domain for 2owt:
  3. 2145197Bradyrhizobium sp. [TaxId:288000] [267971] (1 PDB entry)
  4. 2145200Burkholderia cepacia [TaxId:292] [255595] (2 PDB entries)
    1. Domains for 2uye:
      1. 2145201Domain d2uyea1: 2uye A:88-301 [243826]
        Other proteins in same PDB: d2uyea2
        automated match to d1utbb_
        protein/DNA complex; complexed with gol, scn; mutant
      2. 2145202Domain d2uyeb_: 2uye B: [243827]
        Other proteins in same PDB: d2uyea2
        automated match to d1utbb_
        protein/DNA complex; complexed with gol, scn; mutant
    2. Domains for 2uyf:
      1. 2145203Domain d2uyfa1: 2uyf A:89-301 [243828]
        Other proteins in same PDB: d2uyfa2
        automated match to d1utbb_
        protein/DNA complex; complexed with act, gol, scn; mutant
      2. 2145204Domain d2uyfb_: 2uyf B: [243829]
        Other proteins in same PDB: d2uyfa2
        automated match to d1utbb_
        protein/DNA complex; complexed with act, gol, scn; mutant
  5. 2145205Burkholderia sp. [TaxId:233098] [190010] (5 PDB entries)
    1. Domains for 2y7k:
      1. 2145207Domain d2y7ka_: 2y7k A: [207493]
        Other proteins in same PDB: d2y7kb2, d2y7kc2
        automated match to d2y7pa_
        complexed with sal
      2. 2145208Domain d2y7kb1: 2y7k B:91-301 [207494]
        Other proteins in same PDB: d2y7kb2, d2y7kc2
        automated match to d2y7pa_
        complexed with sal
      3. 2145209Domain d2y7kc1: 2y7k C:91-301 [207495]
        Other proteins in same PDB: d2y7kb2, d2y7kc2
        automated match to d2y7pa_
        complexed with sal
      4. 2145210Domain d2y7kd_: 2y7k D: [207496]
        Other proteins in same PDB: d2y7kb2, d2y7kc2
        automated match to d2y7pa_
        complexed with sal
    2. Domain for 2y7p:
    3. Domains for 2y7r:
      1. 2145223Domain d2y7ra_: 2y7r A: [170670]
        automated match to d1utba_
      2. 2145224Domain d2y7rb_: 2y7r B: [170671]
        automated match to d1utba_
      3. 2145225Domain d2y7rc_: 2y7r C: [170672]
        automated match to d1utba_
      4. 2145226Domain d2y7rd_: 2y7r D: [170673]
        automated match to d1utba_
      5. 2145227Domain d2y7re_: 2y7r E: [170674]
        automated match to d1utba_
      6. 2145228Domain d2y7rf_: 2y7r F: [170675]
        automated match to d1utba_
      7. 2145229Domain d2y7rg_: 2y7r G: [170676]
        automated match to d1utba_
      8. 2145230Domain d2y7rh_: 2y7r H: [170677]
        automated match to d1utba_
    4. Domains for 2y7w:
      1. 2145219Domain d2y7wa_: 2y7w A: [207497]
        automated match to d2y84h_
        complexed with pg4, sal
      2. 2145220Domain d2y7wb_: 2y7w B: [207498]
        automated match to d2y84h_
        complexed with pg4, sal
      3. 2145221Domain d2y7wc_: 2y7w C: [207499]
        automated match to d2y84h_
        complexed with pg4, sal
      4. 2145222Domain d2y7wd_: 2y7w D: [207500]
        automated match to d2y84h_
        complexed with pg4, sal
    5. Domains for 2y84:
      1. 2145211Domain d2y84a_: 2y84 A: [198681]
        automated match to d2y84h_
        complexed with gol
      2. 2145212Domain d2y84b_: 2y84 B: [198682]
        automated match to d2y84h_
        complexed with gol
      3. 2145213Domain d2y84c_: 2y84 C: [198683]
        automated match to d2y84h_
        complexed with gol
      4. 2145214Domain d2y84d_: 2y84 D: [198684]
        automated match to d2y84h_
        complexed with gol
      5. 2145215Domain d2y84e_: 2y84 E: [198685]
        automated match to d2y84h_
        complexed with gol
      6. 2145216Domain d2y84f_: 2y84 F: [198686]
        automated match to d2y84h_
        complexed with gol
      7. 2145217Domain d2y84g_: 2y84 G: [198687]
        automated match to d2y84h_
        complexed with gol
      8. 2145218Domain d2y84h_: 2y84 H: [196306]
        automated match to d1utbb_
        complexed with gol
  6. 2145231Escherichia coli K-12 [TaxId:83333] [189211] (10 PDB entries)
    1. Domains for 3axf:
      1. 2145243Domain d3axfa_: 3axf A: [172370]
        automated match to d1amfa_
        complexed with reo; mutant
      2. 2145244Domain d3axfb_: 3axf B: [172371]
        automated match to d1amfa_
        complexed with reo; mutant
      3. 2145245Domain d3axfc_: 3axf C: [172372]
        automated match to d1amfa_
        complexed with reo; mutant
    2. Domains for 3hst:
      1. 2145254Domain d3hsta1: 3hst A:14-374 [211302]
        Other proteins in same PDB: d3hsta2, d3hstc2
        automated match to d1laxa_
        complexed with edo, mlr, tar
      2. 2145255Domain d3hstc1: 3hst C:10-374 [211303]
        Other proteins in same PDB: d3hsta2, d3hstc2
        automated match to d1laxa_
        complexed with edo, mlr, tar
    3. Domain for 3puv:
    4. Domain for 3puw:
    5. Domain for 3pux:
    6. Domain for 3r26:
    7. Domains for 3tcf:
      1. 2145246Domain d3tcfa_: 3tcf A: [185748]
        automated match to d1b05a_
      2. 2145247Domain d3tcfb_: 3tcf B: [185749]
        automated match to d1b05a_
      3. 2145248Domain d3tcfc_: 3tcf C: [185750]
        automated match to d1b05a_
      4. 2145249Domain d3tcfd_: 3tcf D: [185751]
        automated match to d1b05a_
      5. 2145250Domain d3tcfe_: 3tcf E: [185752]
        automated match to d1b05a_
      6. 2145251Domain d3tcff_: 3tcf F: [185753]
        automated match to d1b05a_
      7. 2145252Domain d3tcfg_: 3tcf G: [185754]
        automated match to d1b05a_
      8. 2145253Domain d3tcfh_: 3tcf H: [185755]
        automated match to d1b05a_
    8. Domains for 3tcg:
      1. 2145235Domain d3tcga_: 3tcg A: [185756]
        automated match to d1b05a_
      2. 2145236Domain d3tcgb_: 3tcg B: [185757]
        automated match to d1b05a_
      3. 2145237Domain d3tcgc_: 3tcg C: [185758]
        automated match to d1b05a_
      4. 2145238Domain d3tcgd_: 3tcg D: [185759]
        automated match to d1b05a_
      5. 2145239Domain d3tcge_: 3tcg E: [185760]
        automated match to d1b05a_
      6. 2145240Domain d3tcgf_: 3tcg F: [185761]
        automated match to d1b05a_
      7. 2145241Domain d3tcgg_: 3tcg G: [185762]
        automated match to d1b05a_
      8. 2145242Domain d3tcgh_: 3tcg H: [185763]
        automated match to d1b05a_
    9. Domain for 3tch:
    10. Domain for 4jdf:
  7. 2145259Escherichia coli [TaxId:536056] [255489] (2 PDB entries)
    1. Domain for 2m8c:
    2. Domain for 4o4b:
  8. 2145262Escherichia coli [TaxId:562] [189978] (9 PDB entries)
    1. Domains for 3lbs:
      1. 2145270Domain d3lbsa_: 3lbs A: [212790]
        automated match to d1a7lb_
        complexed with mal
      2. 2145271Domain d3lbsb_: 3lbs B: [212791]
        automated match to d1a7lb_
        complexed with mal
    2. Domains for 3lc8:
      1. 2145266Domain d3lc8a_: 3lc8 A: [212792]
        automated match to d1a7lb_
        complexed with gol, mg, pg4
      2. 2145267Domain d3lc8b_: 3lc8 B: [212793]
        automated match to d1a7lb_
        complexed with gol, mg, pg4
    3. Domain for 3q25:
    4. Domain for 3q27:
    5. Domain for 3q28:
    6. Domains for 3q29:
      1. 2145268Domain d3q29a_: 3q29 A: [184165]
        automated match to d1a7la_
        complexed with gol, mal, so4
      2. 2145269Domain d3q29c_: 3q29 C: [184166]
        automated match to d1a7la_
        complexed with gol, mal, so4
    7. Domain for 5e7u:
    8. Domain for 5gru:
    9. Domain for 5i69:
  9. 2145272Haemophilus influenzae [TaxId:727] [255670] (6 PDB entries)
    1. Domain for 2wx9:
    2. Domain for 2wyp:
    3. Domain for 2xa5:
    4. Domain for 2xwk:
    5. Domain for 2xwo:
    6. Domain for 2xxk:
  10. 2145279Human (Homo sapiens) [TaxId:9606] [189406] (4 PDB entries)
    1. Domains for 2xhd:
      1. 2145280Domain d2xhda_: 2xhd A: [170092]
        automated match to d1lbcb_
        complexed with 7t9, glu, so4
      2. 2145281Domain d2xhdb_: 2xhd B: [170093]
        automated match to d1lbcb_
        complexed with 7t9, glu, so4
    2. Domains for 3r7x:
      1. 2145282Domain d3r7xa_: 3r7x A: [184838]
        automated match to d1mm6a_
        complexed with glu, qsn
      2. 2145283Domain d3r7xb_: 3r7x B: [184839]
        automated match to d1mm6a_
        complexed with glu, qsn
    3. Domain for 4ys9:
    4. Domains for 5h8s:
      1. 2271422Domain d5h8sa_: 5h8s A: [314725]
        Other proteins in same PDB: d5h8sc2
        automated match to d2xhda_
        complexed with 5yc, cac, glu, zn
      2. 2271429Domain d5h8sc1: 5h8s C:3-262 [314732]
        Other proteins in same PDB: d5h8sc2
        automated match to d2xhda_
        complexed with 5yc, cac, glu, zn
      3. 2271441Domain d5h8sb_: 5h8s B: [314744]
        Other proteins in same PDB: d5h8sc2
        automated match to d2xhda_
        complexed with 5yc, cac, glu, zn
  11. 2145284Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (33 PDB entries)
    1. Domains for 2uxa:
      1. 2145316Domain d2uxaa_: 2uxa A: [168209]
        automated match to d1lb8a_
        complexed with glu, zn
      2. 2145317Domain d2uxab_: 2uxa B: [168210]
        automated match to d1lb8a_
        complexed with glu, zn
      3. 2145318Domain d2uxac_: 2uxa C: [168211]
        automated match to d1lb8a_
        complexed with glu, zn
    2. Domains for 2xx7:
      1. 2145307Domain d2xx7a1: 2xx7 A:3-262 [207393]
        Other proteins in same PDB: d2xx7a2, d2xx7b2
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
      2. 2145308Domain d2xx7b1: 2xx7 B:3-262 [207394]
        Other proteins in same PDB: d2xx7a2, d2xx7b2
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
      3. 2145309Domain d2xx7c_: 2xx7 C: [207395]
        Other proteins in same PDB: d2xx7a2, d2xx7b2
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
    3. Domain for 3dln:
    4. Domain for 3dp4:
    5. Domain for 3en3:
    6. Domains for 3epe:
      1. 2145299Domain d3epea_: 3epe A: [175143]
        automated match to d1ftja_
        complexed with glu
      2. 2145300Domain d3epeb_: 3epe B: [175144]
        automated match to d1ftja_
        complexed with glu
    7. Domains for 3fas:
      1. 2145285Domain d3fasa1: 3fas A:2-260 [175617]
        Other proteins in same PDB: d3fasa2, d3fasb2
        automated match to d1mm6a_
        complexed with glu, gol, so4
      2. 2145286Domain d3fasb1: 3fas B:2-260 [175618]
        Other proteins in same PDB: d3fasa2, d3fasb2
        automated match to d1mm6a_
        complexed with glu, gol, so4
    8. Domains for 3fat:
      1. 2145296Domain d3fata1: 3fat A:2-259 [175619]
        Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
      2. 2145297Domain d3fatb1: 3fat B:2-259 [175620]
        Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
      3. 2145298Domain d3fatc1: 3fat C:2-260 [175621]
        Other proteins in same PDB: d3fata2, d3fatb2, d3fatc2
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
    9. Domains for 3kei:
      1. 2145303Domain d3keia_: 3kei A: [179304]
        automated match to d1lbca_
        complexed with glu; mutant
      2. 2145304Domain d3keib_: 3kei B: [179305]
        automated match to d1lbca_
        complexed with glu; mutant
    10. Domain for 3kfm:
    11. Domain for 3lsw:
    12. Domain for 3lsx:
    13. Domain for 3m3f:
    14. Domains for 3m3k:
      1. 2145293Domain d3m3ka_: 3m3k A: [180794]
        automated match to d1m5da_
        complexed with glu, zn
      2. 2145294Domain d3m3kc_: 3m3k C: [180795]
        automated match to d1m5da_
        complexed with glu, zn
      3. 2145295Domain d3m3ke_: 3m3k E: [180796]
        automated match to d1m5da_
        complexed with glu, zn
    15. Domain for 3rt6:
    16. Domain for 3rt8:
    17. Domains for 4f1y:
      1. 2145290Domain d4f1ya_: 4f1y A: [195369]
        automated match to d3m3ka_
        complexed with cni, zn
      2. 2145291Domain d4f1yc_: 4f1y C: [195368]
        automated match to d3m3ka_
        complexed with cni, zn
    18. Domain for 4f22:
    19. Domain for 4f29:
    20. Domain for 4f2o:
    21. Domain for 4f2q:
    22. Domains for 4f31:
      1. 2145313Domain d4f31b_: 4f31 B: [195272]
        automated match to d3m3ka_
        complexed with kai, zn; mutant
      2. 2145314Domain d4f31d_: 4f31 D: [195277]
        automated match to d3m3ka_
        complexed with kai, zn; mutant
    23. Domain for 4f39:
    24. Domain for 4f3b:
    25. Domain for 4f3g:
    26. Domains for 5buu:
      1. 2269358Domain d5buua_: 5buu A: [312664]
        automated match to d2xhda_
        complexed with 4v6, edo, glu, so4
      2. 2269462Domain d5buub_: 5buu B: [312768]
        automated match to d2xhda_
        complexed with 4v6, edo, glu, so4
    27. Domains for 5elv:
      1. 2273639Domain d5elvb1: 5elv B:3-263 [316940]
        Other proteins in same PDB: d5elva2, d5elvb2
        automated match to d5ftia_
        complexed with 5px, act, cl, glu, gol, peg, so4
      2. 2273645Domain d5elva1: 5elv A:3-263 [316946]
        Other proteins in same PDB: d5elva2, d5elvb2
        automated match to d5ftia_
        complexed with 5px, act, cl, glu, gol, peg, so4
    28. Domains for 5fhm:
      1. 2271079Domain d5fhmb_: 5fhm B: [314384]
        automated match to d2xhda_
        complexed with 5xp, act, edo, gol, li, so4
      2. 2271097Domain d5fhma_: 5fhm A: [314402]
        automated match to d2xhda_
        complexed with 5xp, act, edo, gol, li, so4
    29. Domain for 5fhn:
    30. Domains for 5fho:
      1. 2271082Domain d5fhoa_: 5fho A: [314387]
        Other proteins in same PDB: d5fhod2
        automated match to d2xhda_
        complexed with 5xn, cl, edo, gol, pg4, so4
      2. 2271154Domain d5fhoc_: 5fho C: [314459]
        Other proteins in same PDB: d5fhod2
        automated match to d2xhda_
        complexed with 5xn, cl, edo, gol, pg4, so4
      3. 2271189Domain d5fhod1: 5fho D:3-261 [314494]
        Other proteins in same PDB: d5fhod2
        automated match to d2xhda_
        complexed with 5xn, cl, edo, gol, pg4, so4
      4. 2271256Domain d5fhob_: 5fho B: [314561]
        Other proteins in same PDB: d5fhod2
        automated match to d2xhda_
        complexed with 5xn, cl, edo, gol, pg4, so4
    31. Domains for 5fth:
      1. 2271190Domain d5ftha_: 5fth A: [314495]
        automated match to d2xhda_
        complexed with glu, zn
      2. 2271206Domain d5fthb_: 5fth B: [314511]
        automated match to d2xhda_
        complexed with glu, zn
      3. 2271216Domain d5fthc_: 5fth C: [314521]
        automated match to d2xhda_
        complexed with glu, zn
    32. Domains for 5fti:
      1. 2271185Domain d5ftib_: 5fti B: [314490]
        automated match to d2xhda_
        complexed with glu, gol, li, so4
      2. 2271283Domain d5ftia_: 5fti A: [314588]
        automated match to d2xhda_
        complexed with glu, gol, li, so4
    33. Domain for 5jei:
  12. 2145323Pasteurella multocida [TaxId:1169409] [257948] (1 PDB entry)
  13. 2145325Pseudomonas aeruginosa [TaxId:287] [195694] (2 PDB entries)
    1. Domains for 3ttk:
      1. 2145328Domain d3ttka_: 3ttk A: [200879]
        automated match to d3ttkc_
      2. 2145329Domain d3ttkb_: 3ttk B: [195696]
        automated match to d1a99a_
      3. 2145330Domain d3ttkc_: 3ttk C: [195695]
        automated match to d1a99a_
    2. Domains for 3ttm:
      1. 2145326Domain d3ttma_: 3ttm A: [195698]
        automated match to d1a99a_
        complexed with put
      2. 2145327Domain d3ttmb_: 3ttm B: [195697]
        automated match to d1a99a_
        complexed with put
  14. 2145331Pseudomonas fluorescens [TaxId:216595] [311288] (1 PDB entry)
  15. 2145333Pseudomonas fluorescens [TaxId:294] [311289] (1 PDB entry)
  16. 2145335Salmonella enterica [TaxId:99287] [227690] (7 PDB entries)
    1. Domains for 4gwo:
      1. 2145336Domain d4gwoa_: 4gwo A: [252343]
        automated match to d4gxaa_
        protein/DNA complex; complexed with gol, so4
      2. 2145337Domain d4gwob_: 4gwo B: [252344]
        automated match to d4gxaa_
        protein/DNA complex; complexed with gol, so4
    2. Domains for 4gxa:
      1. 2145339Domain d4gxaa_: 4gxa A: [227691]
        automated match to d1al3a_
      2. 2145340Domain d4gxab_: 4gxa B: [234552]
        automated match to d4gxaa_
    3. Domain for 4lon:
    4. Domain for 4lp2:
    5. Domain for 4lq2:
    6. Domain for 4lq5:
    7. Domain for 4m4g:
  17. 2145345Sphingomonas sp. [TaxId:90322] [186866] (5 PDB entries)
    1. Domain for 1y3p:
    2. Domain for 1y3q:
    3. Domain for 3vlu:
    4. Domain for 3vlv:
    5. Domains for 3vlw:
      1. 2145350Domain d3vlwa_: 3vlw A: [186515]
        automated match to d1j1na_
        complexed with ca, gol
      2. 2145351Domain d3vlwb_: 3vlw B: [186516]
        automated match to d1j1na_
        complexed with ca, gol
  18. 2145352Thermotoga maritima [TaxId:243274] [259690] (3 PDB entries)
    1. Domains for 4pfu:
      1. 2145353Domain d4pfua_: 4pfu A: [259918]
        Other proteins in same PDB: d4pfub2
        automated match to d1vr5a1
        complexed with mab, mg, so4
      2. 2145354Domain d4pfub1: 4pfu B:20-560 [260734]
        Other proteins in same PDB: d4pfub2
        automated match to d1vr5a1
        complexed with mab, mg, so4
    2. Domains for 4pfw:
      1. 2145355Domain d4pfwa_: 4pfw A: [259691]
        automated match to d1vr5a1
        complexed with gol, mg, so4
      2. 2145356Domain d4pfwb_: 4pfw B: [259917]
        automated match to d1vr5a1
        complexed with gol, mg, so4
    3. Domain for 5hm4:
  19. 2145357Unidentified prokaryotic [TaxId:2725] [228734] (3 PDB entries)
    1. Domains for 3w9v:
      1. 2145358Domain d3w9va_: 3w9v A: [228737]
        automated match to d2v3qa1
        complexed with gol, po4
      2. 2145359Domain d3w9vb_: 3w9v B: [233930]
        automated match to d3w9wa_
        complexed with gol, po4
    2. Domains for 3w9w:
      1. 2145361Domain d3w9wa_: 3w9w A: [228735]
        automated match to d2v3qa1
        complexed with gol, po4
      2. 2145362Domain d3w9wb_: 3w9w B: [228736]
        automated match to d2v3qa1
        complexed with gol, po4
    3. Domain for 4m1v:
  20. 2145363Yersinia pestis [TaxId:214092] [188272] (2 PDB entries)
    1. Domains for 2z22:
      1. 2145364Domain d2z22a1: 2z22 A:2-321 [170991]
        Other proteins in same PDB: d2z22a2, d2z22x2
        automated match to d1ixha_
        complexed with po4
      2. 2145365Domain d2z22x1: 2z22 X:2-321 [170992]
        Other proteins in same PDB: d2z22a2, d2z22x2
        automated match to d1ixha_
        complexed with po4
    2. Domain for 2z23:
  21. 2145367Yersinia pestis [TaxId:377628] [311500] (1 PDB entry)
  22. 2279468Escherichia coli [TaxId:83333] [322769] (1 PDB entry)
  23. 2280095Drosophila melanogaster [TaxId:7227] [323396] (2 PDB entries)
    1. Domain for 5dt6:
    2. Domain for 5ict:
  24. 2287159Streptococcus pyogenes [TaxId:1314] [330460] (1 PDB entry)
  25. 2289191Xanthomonas axonopodis [TaxId:190486] [332492] (1 PDB entry)

More info for Protein automated matches from c.94.1.1: Phosphate binding protein-like

Timeline for Protein automated matches from c.94.1.1: Phosphate binding protein-like: