Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1356042Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 1356043Superfamily c.23.1: CheY-like [52172] (8 families) (S)
  5. 1356404Family c.23.1.0: automated matches [191324] (1 protein)
    not a true family
  6. 1356405Protein automated matches [190131] (48 species)
    not a true protein

Species:

  1. 1356406Aspergillus oryzae [TaxId:510516] [231884] (1 PDB entry)
  2. 1356408Aurantimonas sp. [TaxId:314269] [231910] (1 PDB entry)
  3. 1356413Bacteroides fragilis [TaxId:295405] [225318] (1 PDB entry)
  4. 1356415Bermanella marisrubri [TaxId:207949] [225858] (1 PDB entry)
  5. 1356440Burkholderia pseudomallei [TaxId:320372] [226124] (1 PDB entry)
  6. 1356442Carboxydothermus hydrogenoformans [TaxId:246194] [196575] (1 PDB entry)
  7. 1356444Chloroflexus aurantiacus [TaxId:324602] [189714] (1 PDB entry)
  8. 1356447Clostridium difficile [TaxId:272563] [225325] (1 PDB entry)
  9. 1356454Clostridium phytofermentans [TaxId:357809] [225451] (1 PDB entry)
  10. 1356457Clostridium thermocellum [TaxId:203119] [224881] (2 PDB entries)
    1. Domain for 3jte:
    2. Domain for 3lua:
  11. 1356460Colwellia psychrerythraea [TaxId:167879] [188634] (1 PDB entry)
  12. 1356463Deinococcus radiodurans [TaxId:1299] [226278] (1 PDB entry)
  13. 1356465Desulfovibrio desulfuricans [TaxId:207559] [225424] (1 PDB entry)
  14. 1356470Desulfuromonas acetoxidans [TaxId:281689] [225364] (1 PDB entry)
  15. 1356473Escherichia coli [TaxId:562] [186855] (6 PDB entries)
    1. Domain for 1xhe:
    2. Domains for 1xhf:
      1. 1356478Domain d1xhfa_: 1xhf A: [122003]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
      2. 1356479Domain d1xhfb_: 1xhf B: [122004]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
    3. Domains for 1zgz:
      1. 1356474Domain d1zgzb_: 1zgz B: [125066]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      2. 1356475Domain d1zgzc_: 1zgz C: [125067]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      3. 1356476Domain d1zgzd_: 1zgz D: [125068]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
    4. Domain for 1zh2:
    5. Domains for 1zh4:
      1. 1356481Domain d1zh4a_: 1zh4 A: [125071]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 1356482Domain d1zh4b_: 1zh4 B: [125072]
        automated match to d1mvoa_
        complexed with bef, mg
    6. Domain for 4l85:
  16. 1356484Escherichia coli [TaxId:83333] [225766] (2 PDB entries)
    1. Domain for 3eod:
    2. Domains for 4l85:
      1. 1356486Domain d4l85a_: 4l85 A: [237052]
        automated match to d1zh4a_
        complexed with iod; mutant
      2. 1356487Domain d4l85b_: 4l85 B: [237053]
        automated match to d1zh4a_
        complexed with iod; mutant
  17. 1356488Hahella chejuensis [TaxId:349521] [189109] (1 PDB entry)
  18. 1356490Helicobacter pylori [TaxId:210] [187991] (1 PDB entry)
  19. 1356492Helicobacter pylori [TaxId:85962] [189260] (3 PDB entries)
    1. Domain for 3gwg:
    2. Domain for 3h1e:
    3. Domain for 3h1f:
  20. 1356496Klebsiella pneumoniae [TaxId:484021] [233931] (1 PDB entry)
  21. 1356499Klebsiella pneumoniae [TaxId:573] [225322] (1 PDB entry)
  22. 1356502Legionella pneumophila [TaxId:272624] [225321] (1 PDB entry)
  23. 1356504Methanoculleus marisnigri [TaxId:368407] [188339] (1 PDB entry)
  24. 1356506Methanospirillum hungatei [TaxId:323259] [188365] (2 PDB entries)
    1. Domain for 3cg4:
    2. Domains for 3crn:
      1. 1356507Domain d3crna_: 3crn A: [199203]
        automated match to d3crnb_
        complexed with gol, na
      2. 1356508Domain d3crnb_: 3crn B: [195284]
        automated match to d2zwma_
        complexed with gol, na
  25. 1356510Methylobacillus flagellatus [TaxId:265072] [189002] (1 PDB entry)
  26. 1356512Mycobacterium tuberculosis [TaxId:1773] [225553] (2 PDB entries)
    1. Domains for 3eul:
      1. 1356513Domain d3eula_: 3eul A: [209669]
        automated match to d3h1ga_
        complexed with cl
      2. 1356514Domain d3eulb_: 3eul B: [209670]
        automated match to d3h1ga_
        complexed with cl
      3. 1356515Domain d3eulc_: 3eul C: [209671]
        automated match to d3h1ga_
        complexed with cl
      4. 1356516Domain d3euld_: 3eul D: [209672]
        automated match to d3h1ga_
        complexed with cl
    2. Domains for 3nhz:
      1. 1356517Domain d3nhza_: 3nhz A: [213979]
        automated match to d2iyna_
        complexed with mg
      2. 1356518Domain d3nhzb_: 3nhz B: [213980]
        automated match to d2iyna_
        complexed with mg
      3. 1356519Domain d3nhzc_: 3nhz C: [213981]
        automated match to d2iyna_
        complexed with mg
      4. 1356520Domain d3nhzd_: 3nhz D: [213982]
        automated match to d2iyna_
        complexed with mg
  27. 1356521Mycobacterium tuberculosis [TaxId:83332] [225355] (1 PDB entry)
  28. 1356523Myxococcus xanthus [TaxId:246197] [225930] (1 PDB entry)
  29. 1356526Myxococcus xanthus [TaxId:34] [225234] (4 PDB entries)
    1. Domain for 2gkg:
    2. Domains for 2i6f:
      1. 1356530Domain d2i6fa_: 2i6f A: [204718]
        automated match to d2iynb_
        complexed with cl
      2. 1356531Domain d2i6fb_: 2i6f B: [204719]
        automated match to d2iynb_
        complexed with cl
      3. 1356532Domain d2i6fc_: 2i6f C: [204720]
        automated match to d2iynb_
        complexed with cl
    3. Domain for 2nt3:
    4. Domain for 2nt4:
  30. 1356533Neptuniibacter caesariensis [TaxId:207954] [225361] (1 PDB entry)
  31. 1356535Pelobacter carbinolicus [TaxId:338963] [189418] (1 PDB entry)
  32. 1356538Polaromonas sp. [TaxId:296591] [225647] (1 PDB entry)
  33. 1356543Pseudoalteromonas atlantica [TaxId:342610] [189165] (1 PDB entry)
  34. 1356547Pseudomonas fluorescens [TaxId:220664] [232518] (1 PDB entry)
  35. 1356549Pseudomonas putida [TaxId:160488] [188909] (1 PDB entry)
  36. 1356554Rhodobacter capsulatus [TaxId:1061] [225556] (3 PDB entries)
    1. Domain for 2jk1:
    2. Domain for 2vuh:
    3. Domain for 2vui:
  37. 1356558Rhodobacter sphaeroides [TaxId:1063] [225833] (2 PDB entries)
    1. Domain for 3kyi:
    2. Domain for 3kyj:
  38. 1356561Rhodopirellula baltica [TaxId:265606] [225785] (1 PDB entry)
  39. 1356564Rhodospirillum rubrum [TaxId:269796] [188910] (1 PDB entry)
  40. 1356567Silicibacter pomeroyi [TaxId:246200] [231231] (1 PDB entry)
  41. 1356570Staphylococcus aureus [TaxId:1280] [225365] (1 PDB entry)
  42. 1356572Streptococcus pneumoniae [TaxId:171101] [226388] (2 PDB entries)
    1. Domains for 4e7o:
      1. 1356575Domain d4e7oa_: 4e7o A: [220354]
        automated match to d3ffwa_
        complexed with mg
      2. 1356576Domain d4e7ob_: 4e7o B: [220355]
        automated match to d3ffwa_
        complexed with mg
    2. Domains for 4e7p:
      1. 1356573Domain d4e7pa_: 4e7p A: [220356]
        automated match to d3ffwa_
        complexed with bef, mg
      2. 1356574Domain d4e7pb_: 4e7p B: [220357]
        automated match to d3ffwa_
        complexed with bef, mg
  43. 1356577Syntrophus aciditrophicus [TaxId:56780] [225648] (1 PDB entry)
  44. 1356579Thermotoga maritima [TaxId:2336] [188956] (8 PDB entries)
    1. Domains for 2qxy:
      1. 1356588Domain d2qxya_: 2qxy A: [205896]
        automated match to d1xhfb_
        complexed with so4
      2. 1356589Domain d2qxyb_: 2qxy B: [205897]
        automated match to d1xhfb_
        complexed with so4
    2. Domain for 3a0u:
    3. Domain for 3a10:
    4. Domains for 3dge:
      1. 1356593Domain d3dgec_: 3dge C: [173924]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
      2. 1356594Domain d3dged_: 3dge D: [173925]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
    5. Domain for 3dgf:
    6. Domains for 3gl9:
      1. 1356582Domain d3gl9a_: 3gl9 A: [176730]
        automated match to d1mvoa_
        complexed with mg, so4
      2. 1356583Domain d3gl9b_: 3gl9 B: [176731]
        automated match to d1mvoa_
        complexed with mg, so4
      3. 1356584Domain d3gl9c_: 3gl9 C: [176732]
        automated match to d1mvoa_
        complexed with mg, so4
      4. 1356585Domain d3gl9d_: 3gl9 D: [176733]
        automated match to d1mvoa_
        complexed with mg, so4
    7. Domains for 3nnn:
      1. 1356591Domain d3nnna_: 3nnn A: [214012]
        automated match to d2iynb_
        complexed with bef, mg
      2. 1356592Domain d3nnnb_: 3nnn B: [214013]
        automated match to d2iynb_
        complexed with bef, mg
    8. Domains for 3nns:
      1. 1356586Domain d3nnsa_: 3nns A: [214014]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 1356587Domain d3nnsb_: 3nns B: [214015]
        automated match to d1mvoa_
        complexed with bef, mg
  45. 1356595Thermotoga maritima [TaxId:243274] [227724] (1 PDB entry)
  46. 1356597Vibrio cholerae [TaxId:345073] [226740] (2 PDB entries)
    1. Domain for 4h60:
    2. Domain for 4hnr:
  47. 1356600Vibrio parahaemolyticus [TaxId:223926] [188373] (1 PDB entry)
  48. 1356602Wolinella succinogenes [TaxId:844] [188908] (1 PDB entry)

More info for Protein automated matches from c.23.1.0: automated matches

Timeline for Protein automated matches from c.23.1.0: automated matches: