Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2101601Superfamily c.23.1: CheY-like [52172] (8 families) (S)
  5. 2101973Family c.23.1.0: automated matches [191324] (1 protein)
    not a true family
  6. 2101974Protein automated matches [190131] (71 species)
    not a true protein

Species:

  1. 2101975Aquifex aeolicus [TaxId:224324] [255008] (2 PDB entries)
    1. Domain for 1zit:
    2. Domains for 2jrl:
      1. 2101976Domain d2jrla_: 2jrl A: [242272]
        automated match to d1j56a_
      2. 2101977Domain d2jrlb_: 2jrl B: [242273]
        automated match to d1j56a_
  2. 2101979Aspergillus oryzae [TaxId:510516] [231884] (1 PDB entry)
  3. 2101981Aurantimonas sp. [TaxId:314269] [231910] (1 PDB entry)
  4. 2101986Bacillus subtilis [TaxId:224308] [257830] (6 PDB entries)
    1. Domains for 4le0:
      1. 2101989Domain d4le0a_: 4le0 A: [266655]
        automated match to d4le2a_
        protein/DNA complex; complexed with act, bef, gol, mg
      2. 2101990Domain d4le0b_: 4le0 B: [266656]
        automated match to d4le2a_
        protein/DNA complex; complexed with act, bef, gol, mg
    2. Domains for 4le1:
      1. 2101987Domain d4le1a_: 4le1 A: [266657]
        automated match to d4le2a_
        complexed with act, gol, so4
      2. 2101988Domain d4le1b_: 4le1 B: [266658]
        automated match to d4le2a_
        complexed with act, gol, so4
    3. Domains for 4le2:
      1. 2101991Domain d4le2a_: 4le2 A: [257831]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d3t8ya_
        complexed with k, po4
      2. 2101992Domain d4le2b1: 4le2 B:1-130 [257832]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d3t8ya_
        complexed with k, po4
      3. 2101993Domain d4le2c1: 4le2 C:1-131 [262923]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d4le2a_
        complexed with k, po4
      4. 2101994Domain d4le2d1: 4le2 D:1-129 [262924]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d4le2a_
        complexed with k, po4
    4. Domains for 5iuk:
      1. 2284078Domain d5iukf1: 5iuk F:1-132 [327379]
        Other proteins in same PDB: d5iukc2, d5iukf2
        automated match to d4le0b_
        complexed with acp, k, mg
      2. 2284120Domain d5iukc1: 5iuk C:1-131 [327421]
        Other proteins in same PDB: d5iukc2, d5iukf2
        automated match to d4le0b_
        complexed with acp, k, mg
    5. Domains for 5iul:
      1. 2284056Domain d5iulf_: 5iul F: [327357]
        Other proteins in same PDB: d5iulc2
        automated match to d4le0b_
        complexed with acp, k, mg
      2. 2284084Domain d5iulc1: 5iul C:1-131 [327385]
        Other proteins in same PDB: d5iulc2
        automated match to d4le0b_
        complexed with acp, k, mg
    6. Domains for 5iun:
      1. 2284048Domain d5iunc1: 5iun C:1-130 [327349]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
      2. 2284054Domain d5iund_: 5iun D: [327355]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
      3. 2284057Domain d5iunf_: 5iun F: [327358]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
  5. 2101995Bacteroides fragilis [TaxId:295405] [225318] (1 PDB entry)
  6. 2101997Bermanella marisrubri [TaxId:207949] [225858] (1 PDB entry)
  7. 2102022Brucella abortus [TaxId:235] [274729] (2 PDB entries)
    1. Domains for 4d6x:
      1. 2102025Domain d4d6xa_: 4d6x A: [274731]
        automated match to d1zy2b_
        complexed with imd
      2. 2102026Domain d4d6xb_: 4d6x B: [274732]
        automated match to d1zy2b_
        complexed with imd
      3. 2102027Domain d4d6xc_: 4d6x C: [274735]
        automated match to d1zy2b_
        complexed with imd
      4. 2102028Domain d4d6xd_: 4d6x D: [274734]
        automated match to d1zy2b_
        complexed with imd
    2. Domains for 4d6y:
      1. 2102023Domain d4d6ya_: 4d6y A: [274733]
        automated match to d1zy2b_
        complexed with bef, mg
      2. 2102024Domain d4d6yb_: 4d6y B: [274730]
        automated match to d1zy2b_
        complexed with bef, mg
  8. 2102029Brucella abortus [TaxId:359391] [274895] (1 PDB entry)
  9. 2102032Burkholderia pseudomallei [TaxId:320372] [226124] (1 PDB entry)
  10. 2102034Carboxydothermus hydrogenoformans [TaxId:246194] [196575] (1 PDB entry)
  11. 2102036Chloroflexus aurantiacus [TaxId:324602] [189714] (1 PDB entry)
  12. 2102039Clostridium difficile [TaxId:272563] [225325] (1 PDB entry)
  13. 2102046Clostridium phytofermentans [TaxId:357809] [225451] (1 PDB entry)
  14. 2102049Clostridium thermocellum [TaxId:203119] [224881] (2 PDB entries)
    1. Domain for 3jte:
    2. Domain for 3lua:
  15. 2102052Colwellia psychrerythraea [TaxId:167879] [188634] (1 PDB entry)
  16. 2102055Deinococcus radiodurans [TaxId:1299] [226278] (1 PDB entry)
  17. 2102057Desulfovibrio desulfuricans [TaxId:207559] [225424] (1 PDB entry)
  18. 2102062Desulfuromonas acetoxidans [TaxId:281689] [225364] (1 PDB entry)
  19. 2102065Dyadobacter fermentans [TaxId:471854] [269223] (1 PDB entry)
  20. 2102067Escherichia coli K-12 [TaxId:83333] [225766] (2 PDB entries)
    1. Domain for 3eod:
    2. Domains for 4l85:
      1. 2102069Domain d4l85a1: 4l85 A:3-119 [237052]
        Other proteins in same PDB: d4l85a2, d4l85b2, d4l85c2
        automated match to d1zh4a_
        complexed with iod; mutant
      2. 2102070Domain d4l85b1: 4l85 B:3-119 [237053]
        Other proteins in same PDB: d4l85a2, d4l85b2, d4l85c2
        automated match to d1zh4a_
        complexed with iod; mutant
  21. 2102071Escherichia coli [TaxId:562] [186855] (6 PDB entries)
    1. Domain for 1xhe:
    2. Domains for 1xhf:
      1. 2102076Domain d1xhfa_: 1xhf A: [122003]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
      2. 2102077Domain d1xhfb_: 1xhf B: [122004]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
    3. Domains for 1zgz:
      1. 2102072Domain d1zgzb_: 1zgz B: [125066]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      2. 2102073Domain d1zgzc_: 1zgz C: [125067]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      3. 2102074Domain d1zgzd_: 1zgz D: [125068]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
    4. Domain for 1zh2:
    5. Domains for 1zh4:
      1. 2102079Domain d1zh4a_: 1zh4 A: [125071]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 2102080Domain d1zh4b_: 1zh4 B: [125072]
        automated match to d1mvoa_
        complexed with bef, mg
    6. Domain for 4l85:
  22. 2102082Hahella chejuensis [TaxId:349521] [189109] (1 PDB entry)
  23. 2102084Helicobacter pylori [TaxId:210] [187991] (1 PDB entry)
  24. 2102086Helicobacter pylori [TaxId:85962] [189260] (3 PDB entries)
    1. Domain for 3gwg:
    2. Domain for 3h1e:
    3. Domain for 3h1f:
  25. 2102090Helicobacter pylori [TaxId:85963] [255222] (2 PDB entries)
    1. Domains for 2hqo:
      1. 2102093Domain d2hqoa_: 2hqo A: [242054]
        automated match to d2plna_
      2. 2102094Domain d2hqob_: 2hqo B: [242055]
        automated match to d2plna_
    2. Domains for 2hqr:
      1. 2102091Domain d2hqra1: 2hqr A:1-117 [242056]
        Other proteins in same PDB: d2hqra2, d2hqrb2
        automated match to d1kgsa2
      2. 2102092Domain d2hqrb1: 2hqr B:1-117 [242058]
        Other proteins in same PDB: d2hqra2, d2hqrb2
        automated match to d1kgsa2
  26. 2102095Klebsiella pneumoniae [TaxId:484021] [233931] (1 PDB entry)
  27. 2102098Klebsiella pneumoniae [TaxId:573] [225322] (1 PDB entry)
  28. 2102101Legionella pneumophila [TaxId:272624] [225321] (1 PDB entry)
  29. 2102103Leptospira biflexa [TaxId:355278] [257624] (1 PDB entry)
  30. 2102106Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [255875] (1 PDB entry)
  31. 2102108Methanoculleus marisnigri [TaxId:368407] [188339] (1 PDB entry)
  32. 2102110Methanospirillum hungatei [TaxId:323259] [188365] (2 PDB entries)
    1. Domain for 3cg4:
    2. Domains for 3crn:
      1. 2102111Domain d3crna1: 3crn A:2-122 [199203]
        Other proteins in same PDB: d3crna2, d3crna3, d3crnb2, d3crnb3
        automated match to d3crnb_
        complexed with gol, na
      2. 2102112Domain d3crnb1: 3crn B:2-122 [195284]
        Other proteins in same PDB: d3crna2, d3crna3, d3crnb2, d3crnb3
        automated match to d2zwma_
        complexed with gol, na
  33. 2102114Methylobacillus flagellatus [TaxId:265072] [189002] (1 PDB entry)
  34. 2102116Mycobacterium tuberculosis [TaxId:1773] [225553] (2 PDB entries)
    1. Domains for 3eul:
      1. 2102117Domain d3eula_: 3eul A: [209669]
        automated match to d3h1ga_
        complexed with cl
      2. 2102118Domain d3eulb_: 3eul B: [209670]
        automated match to d3h1ga_
        complexed with cl
      3. 2102119Domain d3eulc_: 3eul C: [209671]
        automated match to d3h1ga_
        complexed with cl
      4. 2102120Domain d3euld_: 3eul D: [209672]
        automated match to d3h1ga_
        complexed with cl
    2. Domains for 3nhz:
      1. 2102121Domain d3nhza_: 3nhz A: [213979]
        automated match to d2iyna_
        complexed with mg
      2. 2102122Domain d3nhzb_: 3nhz B: [213980]
        automated match to d2iyna_
        complexed with mg
      3. 2102123Domain d3nhzc_: 3nhz C: [213981]
        automated match to d2iyna_
        complexed with mg
      4. 2102124Domain d3nhzd_: 3nhz D: [213982]
        automated match to d2iyna_
        complexed with mg
  35. 2102125Mycobacterium tuberculosis [TaxId:83332] [225355] (1 PDB entry)
  36. 2102127Myxococcus xanthus [TaxId:246197] [225930] (1 PDB entry)
  37. 2102130Myxococcus xanthus [TaxId:34] [225234] (4 PDB entries)
    1. Domain for 2gkg:
    2. Domains for 2i6f:
      1. 2102134Domain d2i6fa_: 2i6f A: [204718]
        automated match to d2iynb_
        complexed with cl
      2. 2102135Domain d2i6fb_: 2i6f B: [204719]
        automated match to d2iynb_
        complexed with cl
      3. 2102136Domain d2i6fc_: 2i6f C: [204720]
        automated match to d2iynb_
        complexed with cl
    3. Domain for 2nt3:
    4. Domain for 2nt4:
  38. 2102137Neptuniibacter caesariensis [TaxId:207954] [225361] (1 PDB entry)
  39. 2102139Pelobacter carbinolicus [TaxId:338963] [189418] (1 PDB entry)
  40. 2102142Polaromonas sp. [TaxId:296591] [225647] (1 PDB entry)
  41. 2102147Pseudoalteromonas atlantica [TaxId:342610] [189165] (1 PDB entry)
  42. 2102151Pseudomonas fluorescens [TaxId:220664] [232518] (1 PDB entry)
  43. 2102154Pseudomonas putida [TaxId:160488] [188909] (1 PDB entry)
  44. 2102159Rhodobacter capsulatus [TaxId:1061] [225556] (3 PDB entries)
    1. Domain for 2jk1:
    2. Domain for 2vuh:
    3. Domain for 2vui:
  45. 2102163Rhodobacter sphaeroides [TaxId:1063] [225833] (2 PDB entries)
    1. Domain for 3kyi:
    2. Domain for 3kyj:
  46. 2102166Rhodopirellula baltica [TaxId:265606] [225785] (1 PDB entry)
  47. 2102169Rhodopseudomonas palustris [TaxId:258594] [278269] (1 PDB entry)
  48. 2102172Rhodospirillum rubrum [TaxId:269796] [188910] (1 PDB entry)
  49. 2102175Silicibacter pomeroyi [TaxId:246200] [231231] (1 PDB entry)
  50. 2102178Staphylococcus aureus [TaxId:1280] [225365] (1 PDB entry)
  51. 2102180Streptococcus pneumoniae [TaxId:171101] [226388] (2 PDB entries)
    1. Domains for 4e7o:
      1. 2102183Domain d4e7oa1: 4e7o A:1-129 [220354]
        Other proteins in same PDB: d4e7oa2, d4e7ob2
        automated match to d3ffwa_
        complexed with mg
      2. 2102184Domain d4e7ob1: 4e7o B:1-130 [220355]
        Other proteins in same PDB: d4e7oa2, d4e7ob2
        automated match to d3ffwa_
        complexed with mg
    2. Domains for 4e7p:
      1. 2102181Domain d4e7pa1: 4e7p A:1-130 [220356]
        Other proteins in same PDB: d4e7pa2, d4e7pb2
        automated match to d3ffwa_
        complexed with bef, mg
      2. 2102182Domain d4e7pb1: 4e7p B:1-130 [220357]
        Other proteins in same PDB: d4e7pa2, d4e7pb2
        automated match to d3ffwa_
        complexed with bef, mg
  52. 2102185Streptococcus pneumoniae [TaxId:914130] [259663] (1 PDB entry)
  53. 2102187Syntrophus aciditrophicus [TaxId:56780] [225648] (1 PDB entry)
  54. 2102189Thale cress (Arabidopsis thaliana) [TaxId:3702] [267930] (1 PDB entry)
  55. 2102191Thermotoga maritima [TaxId:2336] [188956] (11 PDB entries)
    1. Domains for 2qxy:
      1. 2102202Domain d2qxya1: 2qxy A:4-121 [205896]
        Other proteins in same PDB: d2qxya2
        automated match to d1xhfb_
        complexed with so4
      2. 2102203Domain d2qxyb_: 2qxy B: [205897]
        Other proteins in same PDB: d2qxya2
        automated match to d1xhfb_
        complexed with so4
    2. Domain for 3a0u:
    3. Domain for 3a10:
    4. Domains for 3dge:
      1. 2102210Domain d3dgec_: 3dge C: [173924]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
      2. 2102211Domain d3dged_: 3dge D: [173925]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
    5. Domain for 3dgf:
    6. Domains for 3gl9:
      1. 2102194Domain d3gl9a_: 3gl9 A: [176730]
        automated match to d1mvoa_
        complexed with mg, so4
      2. 2102195Domain d3gl9b_: 3gl9 B: [176731]
        automated match to d1mvoa_
        complexed with mg, so4
      3. 2102196Domain d3gl9c_: 3gl9 C: [176732]
        automated match to d1mvoa_
        complexed with mg, so4
      4. 2102197Domain d3gl9d_: 3gl9 D: [176733]
        automated match to d1mvoa_
        complexed with mg, so4
    7. Domains for 3nnn:
      1. 2102205Domain d3nnna_: 3nnn A: [214012]
        automated match to d2iynb_
        complexed with bef, mg
      2. 2102206Domain d3nnnb_: 3nnn B: [214013]
        automated match to d2iynb_
        complexed with bef, mg
    8. Domains for 3nns:
      1. 2102198Domain d3nnsa_: 3nns A: [214014]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 2102199Domain d3nnsb_: 3nns B: [214015]
        automated match to d1mvoa_
        complexed with bef, mg
    9. Domains for 3t8y:
      1. 2102200Domain d3t8ya_: 3t8y A: [249836]
        automated match to d3kyjb_
        complexed with pb
      2. 2102201Domain d3t8yb_: 3t8y B: [249837]
        automated match to d3kyjb_
        complexed with pb
    10. Domain for 4jas:
    11. Domains for 4jav:
      1. 2102207Domain d4javc_: 4jav C: [252858]
        Other proteins in same PDB: d4java1, d4java2, d4javb1, d4javb2
        automated match to d3dgec_
        complexed with adp, cl, mg, so4; mutant
      2. 2102208Domain d4javd_: 4jav D: [252859]
        Other proteins in same PDB: d4java1, d4java2, d4javb1, d4javb2
        automated match to d3dgec_
        complexed with adp, cl, mg, so4; mutant
  56. 2102212Thermotoga maritima [TaxId:243274] [227724] (2 PDB entries)
    1. Domain for 4ja2:
    2. Domain for 4qyw:
  57. 2102215Vibrio cholerae [TaxId:345073] [226740] (2 PDB entries)
    1. Domain for 4h60:
    2. Domain for 4hnr:
  58. 2102218Vibrio parahaemolyticus [TaxId:223926] [188373] (1 PDB entry)
  59. 2102220Wolinella succinogenes [TaxId:844] [188908] (1 PDB entry)
  60. 2269351Agrobacterium tumefaciens [TaxId:1082932] [312657] (1 PDB entry)
  61. 2270672Streptococcus agalactiae [TaxId:1311] [313977] (1 PDB entry)
  62. 2272188Escherichia coli [TaxId:83333] [315489] (3 PDB entries)
    1. Domains for 4uhj:
      1. 2273125Domain d4uhja1: 4uhj A:2-123 [316426]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
      2. 2273134Domain d4uhjb1: 4uhj B:2-123 [316435]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
      3. 2273135Domain d4uhjc1: 4uhj C:2-123 [316436]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
    2. Domains for 4uhk:
      1. 2273124Domain d4uhkb1: 4uhk B:2-123 [316425]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
      2. 2273136Domain d4uhkc1: 4uhk C:2-123 [316437]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
      3. 2273213Domain d4uhka1: 4uhk A:2-123 [316514]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
    3. Domain for 5i4c:
  63. 2273604Acinetobacter baumannii [TaxId:557600] [316905] (1 PDB entry)
  64. 2278969Erythrobacter litoralis [TaxId:314225] [322270] (1 PDB entry)
  65. 2279450Burkholderia multivorans [TaxId:87883] [322751] (1 PDB entry)
  66. 2280493Paraburkholderia phymatum [TaxId:391038] [323794] (1 PDB entry)
  67. 2281491Burkholderia phymatum [TaxId:148447] [324792] (1 PDB entry)
  68. 2285255Acinetobacter baumannii [TaxId:470] [328556] (3 PDB entries)
    1. Domains for 5hm6:
      1. 2285256Domain d5hm6a_: 5hm6 A: [328557]
        automated match to d5dcla_
      2. 2285361Domain d5hm6b_: 5hm6 B: [328662]
        automated match to d5dcla_
    2. Domain for 5x5j:
    3. Domain for 5xjp:
  69. 2288908Paenisporosarcina sp. [TaxId:1231057] [332209] (1 PDB entry)
  70. 2291757Saccharomyces cerevisiae [TaxId:559292] [335058] (1 PDB entry)
  71. 2292748Lactobacillus paracasei [TaxId:1597] [336049] (2 PDB entries)
    1. Domains for 5lwk:
      1. 2292803Domain d5lwkb_: 5lwk B: [336104]
        automated match to d1zh4a_
        complexed with bef, mg
      2. 2292816Domain d5lwka_: 5lwk A: [336117]
        automated match to d1zh4a_
        complexed with bef, mg
    2. Domains for 5lwl:
      1. 2292749Domain d5lwla1: 5lwl A:2-121 [336050]
        Other proteins in same PDB: d5lwla2, d5lwlb2
        automated match to d4q7ea_
        complexed with so4; mutant
      2. 2292848Domain d5lwlb1: 5lwl B:2-121 [336149]
        Other proteins in same PDB: d5lwla2, d5lwlb2
        automated match to d4q7ea_
        complexed with so4; mutant

More info for Protein automated matches from c.23.1.0: automated matches

Timeline for Protein automated matches from c.23.1.0: automated matches: