SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2101601Superfamily c.23.1: CheY-like [52172] (8 families) (S)
  5. 2101973Family c.23.1.0: automated matches [191324] (1 protein)
    not a true family
  6. 2101974Protein automated matches [190131] (68 species)
    not a true protein

Species:

  1. 2101975Aquifex aeolicus [TaxId:224324] [255008] (2 PDB entries)
    1. Domain for 1zit:
    2. Domains for 2jrl:
      1. 2101976Domain d2jrla_: 2jrl A: [242272]
        automated match to d1j56a_
      2. 2101977Domain d2jrlb_: 2jrl B: [242273]
        automated match to d1j56a_
  2. 2101979Aspergillus oryzae [TaxId:510516] [231884] (1 PDB entry)
  3. 2101981Aurantimonas sp. [TaxId:314269] [231910] (1 PDB entry)
  4. 2101986Bacillus subtilis [TaxId:224308] [257830] (6 PDB entries)
    1. Domains for 4le0:
      1. 2101989Domain d4le0a_: 4le0 A: [266655]
        automated match to d4le2a_
        protein/DNA complex; complexed with act, bef, gol, mg
      2. 2101990Domain d4le0b_: 4le0 B: [266656]
        automated match to d4le2a_
        protein/DNA complex; complexed with act, bef, gol, mg
    2. Domains for 4le1:
      1. 2101987Domain d4le1a_: 4le1 A: [266657]
        automated match to d4le2a_
        complexed with act, gol, so4
      2. 2101988Domain d4le1b_: 4le1 B: [266658]
        automated match to d4le2a_
        complexed with act, gol, so4
    3. Domains for 4le2:
      1. 2101991Domain d4le2a_: 4le2 A: [257831]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d3t8ya_
        complexed with k, po4
      2. 2101992Domain d4le2b1: 4le2 B:1-130 [257832]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d3t8ya_
        complexed with k, po4
      3. 2101993Domain d4le2c1: 4le2 C:1-131 [262923]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d4le2a_
        complexed with k, po4
      4. 2101994Domain d4le2d1: 4le2 D:1-129 [262924]
        Other proteins in same PDB: d4le2b2, d4le2c2, d4le2d2
        automated match to d4le2a_
        complexed with k, po4
    4. Domains for 5iuk:
      1. 2284078Domain d5iukf1: 5iuk F:1-132 [327379]
        Other proteins in same PDB: d5iukc2, d5iukf2
        automated match to d4le0b_
        complexed with acp, k, mg
      2. 2284120Domain d5iukc1: 5iuk C:1-131 [327421]
        Other proteins in same PDB: d5iukc2, d5iukf2
        automated match to d4le0b_
        complexed with acp, k, mg
    5. Domains for 5iul:
      1. 2284056Domain d5iulf_: 5iul F: [327357]
        Other proteins in same PDB: d5iulc2
        automated match to d4le0b_
        complexed with acp, k, mg
      2. 2284084Domain d5iulc1: 5iul C:1-131 [327385]
        Other proteins in same PDB: d5iulc2
        automated match to d4le0b_
        complexed with acp, k, mg
    6. Domains for 5iun:
      1. 2284048Domain d5iunc1: 5iun C:1-130 [327349]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
      2. 2284054Domain d5iund_: 5iun D: [327355]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
      3. 2284057Domain d5iunf_: 5iun F: [327358]
        Other proteins in same PDB: d5iunc2
        automated match to d4le0b_
        complexed with acp, bef, mes, mg, so4
  5. 2101995Bacteroides fragilis [TaxId:295405] [225318] (1 PDB entry)
  6. 2101997Bermanella marisrubri [TaxId:207949] [225858] (1 PDB entry)
  7. 2102022Brucella abortus [TaxId:235] [274729] (2 PDB entries)
    1. Domains for 4d6x:
      1. 2102025Domain d4d6xa_: 4d6x A: [274731]
        automated match to d1zy2b_
        complexed with imd
      2. 2102026Domain d4d6xb_: 4d6x B: [274732]
        automated match to d1zy2b_
        complexed with imd
      3. 2102027Domain d4d6xc_: 4d6x C: [274735]
        automated match to d1zy2b_
        complexed with imd
      4. 2102028Domain d4d6xd_: 4d6x D: [274734]
        automated match to d1zy2b_
        complexed with imd
    2. Domains for 4d6y:
      1. 2102023Domain d4d6ya_: 4d6y A: [274733]
        automated match to d1zy2b_
        complexed with bef, mg
      2. 2102024Domain d4d6yb_: 4d6y B: [274730]
        automated match to d1zy2b_
        complexed with bef, mg
  8. 2102029Brucella abortus [TaxId:359391] [274895] (1 PDB entry)
  9. 2102032Burkholderia pseudomallei [TaxId:320372] [226124] (1 PDB entry)
  10. 2102034Carboxydothermus hydrogenoformans [TaxId:246194] [196575] (1 PDB entry)
  11. 2102036Chloroflexus aurantiacus [TaxId:324602] [189714] (1 PDB entry)
  12. 2102039Clostridium difficile [TaxId:272563] [225325] (1 PDB entry)
  13. 2102046Clostridium phytofermentans [TaxId:357809] [225451] (1 PDB entry)
  14. 2102049Clostridium thermocellum [TaxId:203119] [224881] (2 PDB entries)
    1. Domain for 3jte:
    2. Domain for 3lua:
  15. 2102052Colwellia psychrerythraea [TaxId:167879] [188634] (1 PDB entry)
  16. 2102055Deinococcus radiodurans [TaxId:1299] [226278] (1 PDB entry)
  17. 2102057Desulfovibrio desulfuricans [TaxId:207559] [225424] (1 PDB entry)
  18. 2102062Desulfuromonas acetoxidans [TaxId:281689] [225364] (1 PDB entry)
  19. 2102065Dyadobacter fermentans [TaxId:471854] [269223] (1 PDB entry)
  20. 2102067Escherichia coli K-12 [TaxId:83333] [225766] (2 PDB entries)
    1. Domain for 3eod:
    2. Domains for 4l85:
      1. 2102069Domain d4l85a1: 4l85 A:3-119 [237052]
        Other proteins in same PDB: d4l85a2, d4l85b2, d4l85c2
        automated match to d1zh4a_
        complexed with iod; mutant
      2. 2102070Domain d4l85b1: 4l85 B:3-119 [237053]
        Other proteins in same PDB: d4l85a2, d4l85b2, d4l85c2
        automated match to d1zh4a_
        complexed with iod; mutant
  21. 2102071Escherichia coli [TaxId:562] [186855] (6 PDB entries)
    1. Domain for 1xhe:
    2. Domains for 1xhf:
      1. 2102076Domain d1xhfa_: 1xhf A: [122003]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
      2. 2102077Domain d1xhfb_: 1xhf B: [122004]
        automated match to d1mvoa_
        complexed with bef, bf2, bf4, mg
    3. Domains for 1zgz:
      1. 2102072Domain d1zgzb_: 1zgz B: [125066]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      2. 2102073Domain d1zgzc_: 1zgz C: [125067]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
      3. 2102074Domain d1zgzd_: 1zgz D: [125068]
        Other proteins in same PDB: d1zgza1
        automated match to d1nxoa_
        complexed with gol, so4
    4. Domain for 1zh2:
    5. Domains for 1zh4:
      1. 2102079Domain d1zh4a_: 1zh4 A: [125071]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 2102080Domain d1zh4b_: 1zh4 B: [125072]
        automated match to d1mvoa_
        complexed with bef, mg
    6. Domain for 4l85:
  22. 2102082Hahella chejuensis [TaxId:349521] [189109] (1 PDB entry)
  23. 2102084Helicobacter pylori [TaxId:210] [187991] (1 PDB entry)
  24. 2102086Helicobacter pylori [TaxId:85962] [189260] (3 PDB entries)
    1. Domain for 3gwg:
    2. Domain for 3h1e:
    3. Domain for 3h1f:
  25. 2102090Helicobacter pylori [TaxId:85963] [255222] (2 PDB entries)
    1. Domains for 2hqo:
      1. 2102093Domain d2hqoa_: 2hqo A: [242054]
        automated match to d2plna_
      2. 2102094Domain d2hqob_: 2hqo B: [242055]
        automated match to d2plna_
    2. Domains for 2hqr:
      1. 2102091Domain d2hqra1: 2hqr A:1-117 [242056]
        Other proteins in same PDB: d2hqra2, d2hqrb2
        automated match to d1kgsa2
      2. 2102092Domain d2hqrb1: 2hqr B:1-117 [242058]
        Other proteins in same PDB: d2hqra2, d2hqrb2
        automated match to d1kgsa2
  26. 2102095Klebsiella pneumoniae [TaxId:484021] [233931] (1 PDB entry)
  27. 2102098Klebsiella pneumoniae [TaxId:573] [225322] (1 PDB entry)
  28. 2102101Legionella pneumophila [TaxId:272624] [225321] (1 PDB entry)
  29. 2102103Leptospira biflexa [TaxId:355278] [257624] (1 PDB entry)
  30. 2102106Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [255875] (1 PDB entry)
  31. 2102108Methanoculleus marisnigri [TaxId:368407] [188339] (1 PDB entry)
  32. 2102110Methanospirillum hungatei [TaxId:323259] [188365] (2 PDB entries)
    1. Domain for 3cg4:
    2. Domains for 3crn:
      1. 2102111Domain d3crna1: 3crn A:2-122 [199203]
        Other proteins in same PDB: d3crna2, d3crna3, d3crnb2, d3crnb3
        automated match to d3crnb_
        complexed with gol, na
      2. 2102112Domain d3crnb1: 3crn B:2-122 [195284]
        Other proteins in same PDB: d3crna2, d3crna3, d3crnb2, d3crnb3
        automated match to d2zwma_
        complexed with gol, na
  33. 2102114Methylobacillus flagellatus [TaxId:265072] [189002] (1 PDB entry)
  34. 2102116Mycobacterium tuberculosis [TaxId:1773] [225553] (2 PDB entries)
    1. Domains for 3eul:
      1. 2102117Domain d3eula_: 3eul A: [209669]
        automated match to d3h1ga_
        complexed with cl
      2. 2102118Domain d3eulb_: 3eul B: [209670]
        automated match to d3h1ga_
        complexed with cl
      3. 2102119Domain d3eulc_: 3eul C: [209671]
        automated match to d3h1ga_
        complexed with cl
      4. 2102120Domain d3euld_: 3eul D: [209672]
        automated match to d3h1ga_
        complexed with cl
    2. Domains for 3nhz:
      1. 2102121Domain d3nhza_: 3nhz A: [213979]
        automated match to d2iyna_
        complexed with mg
      2. 2102122Domain d3nhzb_: 3nhz B: [213980]
        automated match to d2iyna_
        complexed with mg
      3. 2102123Domain d3nhzc_: 3nhz C: [213981]
        automated match to d2iyna_
        complexed with mg
      4. 2102124Domain d3nhzd_: 3nhz D: [213982]
        automated match to d2iyna_
        complexed with mg
  35. 2102125Mycobacterium tuberculosis [TaxId:83332] [225355] (1 PDB entry)
  36. 2102127Myxococcus xanthus [TaxId:246197] [225930] (1 PDB entry)
  37. 2102130Myxococcus xanthus [TaxId:34] [225234] (4 PDB entries)
    1. Domain for 2gkg:
    2. Domains for 2i6f:
      1. 2102134Domain d2i6fa_: 2i6f A: [204718]
        automated match to d2iynb_
        complexed with cl
      2. 2102135Domain d2i6fb_: 2i6f B: [204719]
        automated match to d2iynb_
        complexed with cl
      3. 2102136Domain d2i6fc_: 2i6f C: [204720]
        automated match to d2iynb_
        complexed with cl
    3. Domain for 2nt3:
    4. Domain for 2nt4:
  38. 2102137Neptuniibacter caesariensis [TaxId:207954] [225361] (1 PDB entry)
  39. 2102139Pelobacter carbinolicus [TaxId:338963] [189418] (1 PDB entry)
  40. 2102142Polaromonas sp. [TaxId:296591] [225647] (1 PDB entry)
  41. 2102147Pseudoalteromonas atlantica [TaxId:342610] [189165] (1 PDB entry)
  42. 2102151Pseudomonas fluorescens [TaxId:220664] [232518] (1 PDB entry)
  43. 2102154Pseudomonas putida [TaxId:160488] [188909] (1 PDB entry)
  44. 2102159Rhodobacter capsulatus [TaxId:1061] [225556] (3 PDB entries)
    1. Domain for 2jk1:
    2. Domain for 2vuh:
    3. Domain for 2vui:
  45. 2102163Rhodobacter sphaeroides [TaxId:1063] [225833] (2 PDB entries)
    1. Domain for 3kyi:
    2. Domain for 3kyj:
  46. 2102166Rhodopirellula baltica [TaxId:265606] [225785] (1 PDB entry)
  47. 2102169Rhodopseudomonas palustris [TaxId:258594] [278269] (1 PDB entry)
  48. 2102172Rhodospirillum rubrum [TaxId:269796] [188910] (1 PDB entry)
  49. 2102175Silicibacter pomeroyi [TaxId:246200] [231231] (1 PDB entry)
  50. 2102178Staphylococcus aureus [TaxId:1280] [225365] (1 PDB entry)
  51. 2102180Streptococcus pneumoniae [TaxId:171101] [226388] (2 PDB entries)
    1. Domains for 4e7o:
      1. 2102183Domain d4e7oa1: 4e7o A:1-129 [220354]
        Other proteins in same PDB: d4e7oa2, d4e7ob2
        automated match to d3ffwa_
        complexed with mg
      2. 2102184Domain d4e7ob1: 4e7o B:1-130 [220355]
        Other proteins in same PDB: d4e7oa2, d4e7ob2
        automated match to d3ffwa_
        complexed with mg
    2. Domains for 4e7p:
      1. 2102181Domain d4e7pa1: 4e7p A:1-130 [220356]
        Other proteins in same PDB: d4e7pa2, d4e7pb2
        automated match to d3ffwa_
        complexed with bef, mg
      2. 2102182Domain d4e7pb1: 4e7p B:1-130 [220357]
        Other proteins in same PDB: d4e7pa2, d4e7pb2
        automated match to d3ffwa_
        complexed with bef, mg
  52. 2102185Streptococcus pneumoniae [TaxId:914130] [259663] (1 PDB entry)
  53. 2102187Syntrophus aciditrophicus [TaxId:56780] [225648] (1 PDB entry)
  54. 2102189Thale cress (Arabidopsis thaliana) [TaxId:3702] [267930] (1 PDB entry)
  55. 2102191Thermotoga maritima [TaxId:2336] [188956] (11 PDB entries)
    1. Domains for 2qxy:
      1. 2102202Domain d2qxya1: 2qxy A:4-121 [205896]
        Other proteins in same PDB: d2qxya2
        automated match to d1xhfb_
        complexed with so4
      2. 2102203Domain d2qxyb_: 2qxy B: [205897]
        Other proteins in same PDB: d2qxya2
        automated match to d1xhfb_
        complexed with so4
    2. Domain for 3a0u:
    3. Domain for 3a10:
    4. Domains for 3dge:
      1. 2102210Domain d3dgec_: 3dge C: [173924]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
      2. 2102211Domain d3dged_: 3dge D: [173925]
        Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2
        automated match to d1mvoa_
        complexed with adp, cit, so4
    5. Domain for 3dgf:
    6. Domains for 3gl9:
      1. 2102194Domain d3gl9a_: 3gl9 A: [176730]
        automated match to d1mvoa_
        complexed with mg, so4
      2. 2102195Domain d3gl9b_: 3gl9 B: [176731]
        automated match to d1mvoa_
        complexed with mg, so4
      3. 2102196Domain d3gl9c_: 3gl9 C: [176732]
        automated match to d1mvoa_
        complexed with mg, so4
      4. 2102197Domain d3gl9d_: 3gl9 D: [176733]
        automated match to d1mvoa_
        complexed with mg, so4
    7. Domains for 3nnn:
      1. 2102205Domain d3nnna_: 3nnn A: [214012]
        automated match to d2iynb_
        complexed with bef, mg
      2. 2102206Domain d3nnnb_: 3nnn B: [214013]
        automated match to d2iynb_
        complexed with bef, mg
    8. Domains for 3nns:
      1. 2102198Domain d3nnsa_: 3nns A: [214014]
        automated match to d1mvoa_
        complexed with bef, mg
      2. 2102199Domain d3nnsb_: 3nns B: [214015]
        automated match to d1mvoa_
        complexed with bef, mg
    9. Domains for 3t8y:
      1. 2102200Domain d3t8ya_: 3t8y A: [249836]
        automated match to d3kyjb_
        complexed with pb
      2. 2102201Domain d3t8yb_: 3t8y B: [249837]
        automated match to d3kyjb_
        complexed with pb
    10. Domain for 4jas:
    11. Domains for 4jav:
      1. 2102207Domain d4javc_: 4jav C: [252858]
        Other proteins in same PDB: d4java1, d4java2, d4javb1, d4javb2
        automated match to d3dgec_
        complexed with adp, cl, mg, so4; mutant
      2. 2102208Domain d4javd_: 4jav D: [252859]
        Other proteins in same PDB: d4java1, d4java2, d4javb1, d4javb2
        automated match to d3dgec_
        complexed with adp, cl, mg, so4; mutant
  56. 2102212Thermotoga maritima [TaxId:243274] [227724] (2 PDB entries)
    1. Domain for 4ja2:
    2. Domain for 4qyw:
  57. 2102215Vibrio cholerae [TaxId:345073] [226740] (2 PDB entries)
    1. Domain for 4h60:
    2. Domain for 4hnr:
  58. 2102218Vibrio parahaemolyticus [TaxId:223926] [188373] (1 PDB entry)
  59. 2102220Wolinella succinogenes [TaxId:844] [188908] (1 PDB entry)
  60. 2269351Agrobacterium tumefaciens [TaxId:1082932] [312657] (1 PDB entry)
  61. 2270672Streptococcus agalactiae [TaxId:1311] [313977] (1 PDB entry)
  62. 2272188Escherichia coli [TaxId:83333] [315489] (3 PDB entries)
    1. Domains for 4uhj:
      1. 2273125Domain d4uhja1: 4uhj A:2-123 [316426]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
      2. 2273134Domain d4uhjb1: 4uhj B:2-123 [316435]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
      3. 2273135Domain d4uhjc1: 4uhj C:2-123 [316436]
        Other proteins in same PDB: d4uhja2, d4uhjb2, d4uhjc2
        automated match to d3gt7a_
        complexed with mg
    2. Domains for 4uhk:
      1. 2273124Domain d4uhkb1: 4uhk B:2-123 [316425]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
      2. 2273136Domain d4uhkc1: 4uhk C:2-123 [316437]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
      3. 2273213Domain d4uhka1: 4uhk A:2-123 [316514]
        Other proteins in same PDB: d4uhka2, d4uhkb2, d4uhkc2
        automated match to d3gt7a_
        complexed with mg
    3. Domain for 5i4c:
  63. 2273604Acinetobacter baumannii [TaxId:557600] [316905] (1 PDB entry)
  64. 2278969Erythrobacter litoralis [TaxId:314225] [322270] (1 PDB entry)
  65. 2279450Burkholderia multivorans [TaxId:87883] [322751] (1 PDB entry)
  66. 2280493Paraburkholderia phymatum [TaxId:391038] [323794] (1 PDB entry)
  67. 2281491Burkholderia phymatum [TaxId:148447] [324792] (1 PDB entry)
  68. 2285255Acinetobacter baumannii [TaxId:470] [328556] (1 PDB entry)

More info for Protein automated matches from c.23.1.0: automated matches

Timeline for Protein automated matches from c.23.1.0: automated matches: