Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1190016Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1194674Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 1194675Superfamily d.15.1: Ubiquitin-like [54236] (9 families) (S)
  5. 1194676Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 1195091Protein automated matches [190118] (8 species)
    not a true protein

Species:

  1. 1195092Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189675] (3 PDB entries)
    1. Domain for 2jwz:
    2. Domain for 3olm:
    3. Domains for 3qht:
      1. 1195094Domain d3qhta_: 3qht A: [184386]
        automated match to d1euvb_
        complexed with gol
      2. 1195095Domain d3qhtb_: 3qht B: [184387]
        automated match to d1euvb_
        complexed with gol
  2. 1195097Bos taurus [TaxId:9913] [197078] (1 PDB entry)
  3. 1195099Entamoeba histolytica [TaxId:5759] [193323] (1 PDB entry)
  4. 1195101Human (Homo sapiens) [TaxId:9606] [189560] (37 PDB entries)
    1. Domain for 1wyw:
    2. Domains for 1y8r:
      1. 1195161Domain d1y8rc_: 1y8r C: [122761]
        automated match to d1a5r__
        complexed with atp, mg, zn
      2. 1195162Domain d1y8rf_: 1y8r F: [122762]
        automated match to d1a5r__
        complexed with atp, mg, zn
    3. Domain for 2bkr:
    4. Domain for 2c9w:
    5. Domain for 2d07:
    6. Domains for 2gbj:
      1. 1195103Domain d2gbja_: 2gbj A: [164626]
        automated match to d1aara_
        mutant
      2. 1195104Domain d2gbjb_: 2gbj B: [164627]
        automated match to d1aara_
        mutant
    7. Domains for 2gbk:
      1. 1195127Domain d2gbka_: 2gbk A: [164628]
        automated match to d1aara_
        mutant
      2. 1195128Domain d2gbkb_: 2gbk B: [164629]
        automated match to d1aara_
        mutant
      3. 1195129Domain d2gbkc_: 2gbk C: [164630]
        automated match to d1aara_
        mutant
      4. 1195130Domain d2gbkd_: 2gbk D: [164631]
        automated match to d1aara_
        mutant
    8. Domains for 2gbm:
      1. 1195108Domain d2gbma_: 2gbm A: [164632]
        automated match to d1aara_
        complexed with ars; mutant
      2. 1195109Domain d2gbmb_: 2gbm B: [164633]
        automated match to d1aara_
        complexed with ars; mutant
      3. 1195110Domain d2gbmc_: 2gbm C: [164634]
        automated match to d1aara_
        complexed with ars; mutant
      4. 1195111Domain d2gbmd_: 2gbm D: [164635]
        automated match to d1aara_
        complexed with ars; mutant
    9. Domain for 2gbn:
    10. Domains for 2gbr:
      1. 1195124Domain d2gbra_: 2gbr A: [164637]
        automated match to d1aara_
        complexed with cd; mutant
      2. 1195125Domain d2gbrb_: 2gbr B: [164638]
        automated match to d1aara_
        complexed with cd; mutant
      3. 1195126Domain d2gbrc_: 2gbr C: [164639]
        automated match to d1aara_
        complexed with cd; mutant
    11. Domains for 2io1:
      1. 1195154Domain d2io1b_: 2io1 B: [137537]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      2. 1195155Domain d2io1d_: 2io1 D: [137538]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
      3. 1195156Domain d2io1f_: 2io1 F: [137539]
        Other proteins in same PDB: d2io1a_, d2io1c_, d2io1e_
        automated match to d1wm2a_
    12. Domain for 2izv:
    13. Domains for 2o6v:
      1. 1195145Domain d2o6vb_: 2o6v B: [138923]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
      2. 1195146Domain d2o6vf_: 2o6v F: [138926]
        Other proteins in same PDB: d2o6va_, d2o6vc_, d2o6vd1, d2o6ve_, d2o6vg_, d2o6vh_
        automated match to d1aara_
        complexed with mes, so4
    14. Domain for 2wyq:
    15. Domains for 2xai:
      1. 1195158Domain d2xaic_: 2xai C: [169981]
        Other proteins in same PDB: d2xaib_, d2xaie_
        automated match to d1lm8b_
        complexed with cl, edo, peg
      2. 1195159Domain d2xaif_: 2xai F: [169983]
        Other proteins in same PDB: d2xaib_, d2xaie_
        automated match to d1lm8b_
        complexed with cl, edo, peg
    16. Domains for 2zcb:
      1. 1195112Domain d2zcba_: 2zcb A: [154336]
        automated match to d1aara_
        complexed with zn
      2. 1195113Domain d2zcbb_: 2zcb B: [161592]
        automated match to d1aara_
        complexed with zn
      3. 1195114Domain d2zcbc_: 2zcb C: [161593]
        automated match to d1aara_
        complexed with zn
    17. Domain for 3dqv:
    18. Domain for 3jsv:
    19. Domain for 3k9p:
    20. Domain for 3kyc:
    21. Domain for 3kyd:
    22. Domains for 3nob:
      1. 1195137Domain d3noba_: 3nob A: [182440]
        automated match to d1aara_
        complexed with so4
      2. 1195138Domain d3nobb_: 3nob B: [182441]
        automated match to d1aara_
        complexed with so4
      3. 1195139Domain d3nobc_: 3nob C: [182442]
        automated match to d1aara_
        complexed with so4
      4. 1195140Domain d3nobd_: 3nob D: [182443]
        automated match to d1aara_
        complexed with so4
      5. 1195141Domain d3nobe_: 3nob E: [182444]
        automated match to d1aara_
        complexed with so4
      6. 1195142Domain d3nobf_: 3nob F: [182445]
        automated match to d1aara_
        complexed with so4
      7. 1195143Domain d3nobg_: 3nob G: [182446]
        automated match to d1aara_
        complexed with so4
      8. 1195144Domain d3nobh_: 3nob H: [182447]
        automated match to d1aara_
        complexed with so4
    23. Domains for 3rul:
      1. 1195151Domain d3rula_: 3rul A: [195221]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
      2. 1195152Domain d3rulb_: 3rul B: [195220]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
      3. 1195153Domain d3rulc_: 3rul C: [195219]
        automated match to d3noba_
        complexed with cl, m12, man, n1l, tla
    24. Domains for 3rzw:
      1. 1195131Domain d3rzwc_: 3rzw C: [185230]
        automated match to d1a5ra_
        complexed with gol
      2. 1195132Domain d3rzwd_: 3rzw D: [185231]
        automated match to d1a5ra_
        complexed with gol
    25. Domains for 4ap4:
      1. 1195133Domain d4ap4c_: 4ap4 C: [194912]
        Other proteins in same PDB: d4ap4b_
        automated match to d3nobh_
        complexed with zn
      2. 1195134Domain d4ap4f_: 4ap4 F: [194913]
        Other proteins in same PDB: d4ap4b_
        automated match to d3nobh_
        complexed with zn
    26. Domains for 4auq:
      1. 1195135Domain d4auqc_: 4auq C: [194816]
        Other proteins in same PDB: d4auqa_, d4auqd_
        automated match to d3nheb_
        complexed with zn
      2. 1195136Domain d4auqf_: 4auq F: [194818]
        Other proteins in same PDB: d4auqa_, d4auqd_
        automated match to d3nheb_
        complexed with zn
    27. Domain for 4b95:
    28. Domain for 4dwf:
    29. Domain for 4eew:
    30. Domain for 4fjv:
    31. Domain for 4hjk:
    32. Domain for 4hk2:
    33. Domain for 4hxd:
    34. Domain for 4i6l:
    35. Domain for 4i6n:
    36. Domain for 4ium:
    37. Domain for 4ksk:
  5. 1195167Mouse (Mus musculus) [TaxId:10090] [187278] (2 PDB entries)
    1. Domains for 2znv:
      1. 1195168Domain d2znvb_: 2znv B: [154707]
        Other proteins in same PDB: d2znvc_, d2znvf_
        automated match to d1aara_
        complexed with edo, zn
      2. 1195169Domain d2znve_: 2znv E: [154709]
        Other proteins in same PDB: d2znvc_, d2znvf_
        automated match to d1aara_
        complexed with edo, zn
    2. Domain for 3b1l:
  6. 1195171Paramecium tetraurelia strain d4-2 [TaxId:412030] [161334] (1 PDB entry)
  7. 1195173Saccharomyces cerevisiae [TaxId:559292] [193751] (1 PDB entry)
  8. 1195175Schizosaccharomyces pombe [TaxId:284812] [196615] (1 PDB entry)

More info for Protein automated matches from d.15.1.1: Ubiquitin-related

Timeline for Protein automated matches from d.15.1.1: Ubiquitin-related: