Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2106293Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (7 families) (S)
    share similar mode of ligand (Adenosine group) binding
    can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group
  5. 2106562Family c.26.2.0: automated matches [191320] (1 protein)
    not a true family
  6. 2106563Protein automated matches [190116] (23 species)
    not a true protein

Species:

  1. 2106564Acidaminococcus fermentans [TaxId:591001] [236033] (2 PDB entries)
    1. Domain for 4kpu:
    2. Domain for 4l2i:
  2. 2106567Archaeoglobus fulgidus [TaxId:2234] [255933] (1 PDB entry)
  3. 2106571Burkholderia pseudomallei [TaxId:320372] [188500] (2 PDB entries)
    1. Domains for 3dpi:
      1. 2106572Domain d3dpia_: 3dpi A: [174155]
        automated match to d1ee1a_
        complexed with act
      2. 2106573Domain d3dpib_: 3dpi B: [174156]
        automated match to d1ee1a_
        complexed with act
    2. Domain for 4wny:
  4. 2106575Campylobacter jejuni [TaxId:192222] [236078] (1 PDB entry)
  5. 2106577Campylobacter jejuni [TaxId:197] [189531] (1 PDB entry)
  6. 2106580Coxiella burnetii [TaxId:777] [256103] (1 PDB entry)
  7. 2106585Deinococcus radiodurans [TaxId:243230] [271413] (1 PDB entry)
  8. 2106590Escherichia coli [TaxId:562] [186839] (4 PDB entries)
    1. Domain for 1wxf:
    2. Domain for 1wxg:
    3. Domain for 1wxh:
    4. Domain for 1wxi:
  9. 2106595Francisella tularensis [TaxId:376619] [311287] (1 PDB entry)
  10. 2106600Halomonas elongata [TaxId:2746] [189250] (1 PDB entry)
  11. 2106605Human (Homo sapiens) [TaxId:9606] [225190] (1 PDB entry)
  12. 2106607Klebsiella pneumoniae [TaxId:272620] [193623] (2 PDB entries)
    1. Domains for 3fdx:
      1. 2106608Domain d3fdxa1: 3fdx A:2-141 [199401]
        Other proteins in same PDB: d3fdxa2, d3fdxb2
        automated match to d3fdxb_
        complexed with atp, fmt, mg
      2. 2106609Domain d3fdxb1: 3fdx B:2-141 [193624]
        Other proteins in same PDB: d3fdxa2, d3fdxb2
        automated match to d2pfsa_
        complexed with atp, fmt, mg
    2. Domains for 3fh0:
      1. 2106610Domain d3fh0a1: 3fh0 A:1-141 [199404]
        Other proteins in same PDB: d3fh0a2, d3fh0b2
        automated match to d3fh0b_
        complexed with adp, edo
      2. 2106611Domain d3fh0b1: 3fh0 B:1-141 [196115]
        Other proteins in same PDB: d3fh0a2, d3fh0b2
        automated match to d2pfsa_
        complexed with adp, edo
  13. 2106612Lactobacillus plantarum [TaxId:1590] [189984] (1 PDB entry)
  14. 2106621Mycobacterium thermoresistibile [TaxId:1078020] [260068] (2 PDB entries)
    1. Domains for 4u7j:
      1. 2106624Domain d4u7ja1: 4u7j A:3-172 [260070]
        Other proteins in same PDB: d4u7ja2, d4u7jb2
        automated match to d1j20a1
        complexed with cl, edo
      2. 2106625Domain d4u7jb1: 4u7j B:3-172 [260069]
        Other proteins in same PDB: d4u7ja2, d4u7jb2
        automated match to d1j20a1
        complexed with cl, edo
    2. Domains for 4xfj:
      1. 2106622Domain d4xfja1: 4xfj A:2-172 [269189]
        Other proteins in same PDB: d4xfja2, d4xfjb2
        automated match to d4u7ja1
        complexed with anp, arg, edo, mg
      2. 2106623Domain d4xfjb1: 4xfj B:2-172 [269195]
        Other proteins in same PDB: d4xfja2, d4xfjb2
        automated match to d4u7ja1
        complexed with anp, arg, edo, mg
  15. 2106626Nitrosomonas europaea [TaxId:228410] [187986] (2 PDB entries)
    1. Domain for 2pfs:
    2. Domain for 3tnj:
  16. 2106629Pseudomonas aeruginosa, PA01 [TaxId:208964] [269193] (2 PDB entries)
    1. Domain for 4xfd:
    2. Domain for 5f23:
  17. 2106632Pyrococcus horikoshii OT3 [TaxId:70601] [311263] (4 PDB entries)
    1. Domains for 2dpl:
      1. 2106633Domain d2dpla1: 2dpl A:1-189 [204019]
        Other proteins in same PDB: d2dpla2, d2dplb2
        automated match to d1gpma1
      2. 2106634Domain d2dplb1: 2dpl B:6-189 [204021]
        Other proteins in same PDB: d2dpla2, d2dplb2
        automated match to d1gpma1
    2. Domains for 2dum:
      1. 2106639Domain d2duma_: 2dum A: [163707]
        automated match to d1mjha_
      2. 2106640Domain d2dumb_: 2dum B: [163708]
        automated match to d1mjha_
      3. 2106641Domain d2dumc_: 2dum C: [163709]
        automated match to d1mjha_
      4. 2106642Domain d2dumd_: 2dum D: [163710]
        automated match to d1mjha_
    3. Domains for 2e18:
      1. 2106637Domain d2e18a_: 2e18 A: [163802]
        automated match to d1xnga1
        complexed with imd, zn
      2. 2106638Domain d2e18b_: 2e18 B: [163803]
        automated match to d1xnga1
        complexed with imd, zn
    4. Domains for 2z0c:
      1. 2106635Domain d2z0ca1: 2z0c A:1-189 [304790]
        Other proteins in same PDB: d2z0ca2, d2z0cb2
        automated match to d3a4ia1
      2. 2106636Domain d2z0cb1: 2z0c B:3-189 [304792]
        Other proteins in same PDB: d2z0ca2, d2z0cb2
        automated match to d3a4ia1
  18. 2106643Pyrococcus horikoshii [TaxId:53953] [225700] (1 PDB entry)
  19. 2106646Salmonella enterica [TaxId:99287] [311418] (2 PDB entries)
    1. Domains for 4r2l:
      1. 2106647Domain d4r2la_: 4r2l A: [309350]
        automated match to d2pfsa_
        complexed with atp, cl, edo, mg
      2. 2106648Domain d4r2lb_: 4r2l B: [309351]
        automated match to d2pfsa_
        complexed with atp, cl, edo, mg
    2. Domains for 4r2m:
      1. 2106649Domain d4r2ma_: 4r2m A: [309352]
        automated match to d2pfsa_
        complexed with anp, mg; mutant
      2. 2106650Domain d4r2mb_: 4r2m B: [309353]
        automated match to d2pfsa_
        complexed with anp, mg; mutant
  20. 2106651Vibrio cholerae [TaxId:243277] [189621] (1 PDB entry)
  21. 2283232Neisseria gonorrhoeae [TaxId:485] [326533] (1 PDB entry)
  22. 2287232Bordetella pertussis [TaxId:257313] [330533] (1 PDB entry)
  23. 2294748Vibrio fischeri [TaxId:312309] [338049] (1 PDB entry)

More info for Protein automated matches from c.26.2.0: automated matches

Timeline for Protein automated matches from c.26.2.0: automated matches: