SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2105373Fold c.26: Adenine nucleotide alpha hydrolase-like [52373] (3 superfamilies)
    core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
  4. 2106293Superfamily c.26.2: Adenine nucleotide alpha hydrolases-like [52402] (7 families) (S)
    share similar mode of ligand (Adenosine group) binding
    can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group
  5. 2106562Family c.26.2.0: automated matches [191320] (1 protein)
    not a true family
  6. 2106563Protein automated matches [190116] (21 species)
    not a true protein

Species:

  1. 2106564Acidaminococcus fermentans [TaxId:591001] [236033] (2 PDB entries)
    1. Domain for 4kpu:
    2. Domain for 4l2i:
  2. 2106567Archaeoglobus fulgidus [TaxId:2234] [255933] (1 PDB entry)
  3. 2106571Burkholderia pseudomallei [TaxId:320372] [188500] (2 PDB entries)
    1. Domains for 3dpi:
      1. 2106572Domain d3dpia_: 3dpi A: [174155]
        automated match to d1ee1a_
        complexed with act
      2. 2106573Domain d3dpib_: 3dpi B: [174156]
        automated match to d1ee1a_
        complexed with act
    2. Domain for 4wny:
  4. 2106575Campylobacter jejuni [TaxId:192222] [236078] (1 PDB entry)
  5. 2106577Campylobacter jejuni [TaxId:197] [189531] (1 PDB entry)
  6. 2106580Coxiella burnetii [TaxId:777] [256103] (1 PDB entry)
  7. 2106585Deinococcus radiodurans [TaxId:243230] [271413] (1 PDB entry)
  8. 2106590Escherichia coli [TaxId:562] [186839] (4 PDB entries)
    1. Domain for 1wxf:
    2. Domain for 1wxg:
    3. Domain for 1wxh:
    4. Domain for 1wxi:
  9. 2106595Francisella tularensis [TaxId:376619] [311287] (1 PDB entry)
  10. 2106600Halomonas elongata [TaxId:2746] [189250] (1 PDB entry)
  11. 2106605Human (Homo sapiens) [TaxId:9606] [225190] (1 PDB entry)
  12. 2106607Klebsiella pneumoniae [TaxId:272620] [193623] (2 PDB entries)
    1. Domains for 3fdx:
      1. 2106608Domain d3fdxa1: 3fdx A:2-141 [199401]
        Other proteins in same PDB: d3fdxa2, d3fdxb2
        automated match to d3fdxb_
        complexed with atp, fmt, mg
      2. 2106609Domain d3fdxb1: 3fdx B:2-141 [193624]
        Other proteins in same PDB: d3fdxa2, d3fdxb2
        automated match to d2pfsa_
        complexed with atp, fmt, mg
    2. Domains for 3fh0:
      1. 2106610Domain d3fh0a1: 3fh0 A:1-141 [199404]
        Other proteins in same PDB: d3fh0a2, d3fh0b2
        automated match to d3fh0b_
        complexed with adp, edo
      2. 2106611Domain d3fh0b1: 3fh0 B:1-141 [196115]
        Other proteins in same PDB: d3fh0a2, d3fh0b2
        automated match to d2pfsa_
        complexed with adp, edo
  13. 2106612Lactobacillus plantarum [TaxId:1590] [189984] (1 PDB entry)
  14. 2106621Mycobacterium thermoresistibile [TaxId:1078020] [260068] (2 PDB entries)
    1. Domains for 4u7j:
      1. 2106624Domain d4u7ja1: 4u7j A:3-172 [260070]
        Other proteins in same PDB: d4u7ja2, d4u7jb2
        automated match to d1j20a1
        complexed with cl, edo
      2. 2106625Domain d4u7jb1: 4u7j B:3-172 [260069]
        Other proteins in same PDB: d4u7ja2, d4u7jb2
        automated match to d1j20a1
        complexed with cl, edo
    2. Domains for 4xfj:
      1. 2106622Domain d4xfja1: 4xfj A:2-172 [269189]
        Other proteins in same PDB: d4xfja2, d4xfjb2
        automated match to d4u7ja1
        complexed with anp, arg, edo, mg
      2. 2106623Domain d4xfjb1: 4xfj B:2-172 [269195]
        Other proteins in same PDB: d4xfja2, d4xfjb2
        automated match to d4u7ja1
        complexed with anp, arg, edo, mg
  15. 2106626Nitrosomonas europaea [TaxId:228410] [187986] (2 PDB entries)
    1. Domain for 2pfs:
    2. Domain for 3tnj:
  16. 2106629Pseudomonas aeruginosa, PA01 [TaxId:208964] [269193] (2 PDB entries)
    1. Domain for 4xfd:
    2. Domain for 5f23:
  17. 2106632Pyrococcus horikoshii OT3 [TaxId:70601] [311263] (4 PDB entries)
    1. Domains for 2dpl:
      1. 2106633Domain d2dpla1: 2dpl A:1-189 [204019]
        Other proteins in same PDB: d2dpla2, d2dplb2
        automated match to d1gpma1
      2. 2106634Domain d2dplb1: 2dpl B:6-189 [204021]
        Other proteins in same PDB: d2dpla2, d2dplb2
        automated match to d1gpma1
    2. Domains for 2dum:
      1. 2106639Domain d2duma_: 2dum A: [163707]
        automated match to d1mjha_
      2. 2106640Domain d2dumb_: 2dum B: [163708]
        automated match to d1mjha_
      3. 2106641Domain d2dumc_: 2dum C: [163709]
        automated match to d1mjha_
      4. 2106642Domain d2dumd_: 2dum D: [163710]
        automated match to d1mjha_
    3. Domains for 2e18:
      1. 2106637Domain d2e18a_: 2e18 A: [163802]
        automated match to d1xnga1
        complexed with imd, zn
      2. 2106638Domain d2e18b_: 2e18 B: [163803]
        automated match to d1xnga1
        complexed with imd, zn
    4. Domains for 2z0c:
      1. 2106635Domain d2z0ca1: 2z0c A:1-189 [304790]
        Other proteins in same PDB: d2z0ca2, d2z0cb2
        automated match to d3a4ia1
      2. 2106636Domain d2z0cb1: 2z0c B:3-189 [304792]
        Other proteins in same PDB: d2z0ca2, d2z0cb2
        automated match to d3a4ia1
  18. 2106643Pyrococcus horikoshii [TaxId:53953] [225700] (1 PDB entry)
  19. 2106646Salmonella enterica [TaxId:99287] [311418] (2 PDB entries)
    1. Domains for 4r2l:
      1. 2106647Domain d4r2la_: 4r2l A: [309350]
        automated match to d2pfsa_
        complexed with atp, cl, edo, mg
      2. 2106648Domain d4r2lb_: 4r2l B: [309351]
        automated match to d2pfsa_
        complexed with atp, cl, edo, mg
    2. Domains for 4r2m:
      1. 2106649Domain d4r2ma_: 4r2m A: [309352]
        automated match to d2pfsa_
        complexed with anp, mg; mutant
      2. 2106650Domain d4r2mb_: 4r2m B: [309353]
        automated match to d2pfsa_
        complexed with anp, mg; mutant
  20. 2106651Vibrio cholerae [TaxId:243277] [189621] (1 PDB entry)
  21. 2283232Neisseria gonorrhoeae [TaxId:485] [326533] (1 PDB entry)

More info for Protein automated matches from c.26.2.0: automated matches

Timeline for Protein automated matches from c.26.2.0: automated matches: