SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047511Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 2047512Family b.34.13.1: "Histone-like" proteins from archaea [54161] (2 protein domains)
  6. 2047533Protein automated matches [190114] (2 species)
    not a true protein

Species:

  1. 2047534Sulfolobus acidocaldarius [TaxId:2285] [186837] (12 PDB entries)
    1. Domain for 1wto:
    2. Domains for 1wtp:
      1. 2047544Domain d1wtpa_: 1wtp A: [161982]
        automated match to d1azpa_
        protein/DNA complex; mutant
      2. 2047545Domain d1wtpb_: 1wtp B: [161983]
        automated match to d1azpa_
        protein/DNA complex; mutant
    3. Domain for 1wtq:
    4. Domain for 1wtr:
    5. Domain for 1wtv:
    6. Domain for 1wtw:
    7. Domain for 1wtx:
    8. Domains for 1wvl:
      1. 2047548Domain d1wvla_: 1wvl A: [121343]
        automated match to d1azpa_
        protein/DNA complex
      2. 2047549Domain d1wvlb_: 1wvl B: [121344]
        automated match to d1azpa_
        protein/DNA complex
    9. Domain for 1xx8:
    10. Domain for 1xyi:
    11. Domains for 2xiw:
      1. 2047535Domain d2xiwa_: 2xiw A: [196801]
        Other proteins in same PDB: d2xiwb2
        automated match to d1xyia_
        complexed with cl, so4
      2. 2047536Domain d2xiwb1: 2xiw B:2-66 [196802]
        Other proteins in same PDB: d2xiwb2
        automated match to d1xyia_
        complexed with cl, so4
    12. Domains for 4cj2:
      1. 2047538Domain d4cj2c1: 4cj2 C:3-63 [256622]
        Other proteins in same PDB: d4cj2a_, d4cj2b_, d4cj2c2, d4cj2d2
        automated match to d2xiwb_
        complexed with gol
      2. 2047539Domain d4cj2d1: 4cj2 D:3-63 [262577]
        Other proteins in same PDB: d4cj2a_, d4cj2b_, d4cj2c2, d4cj2d2
        automated match to d2xiwb_
        complexed with gol
  2. 2293946Sulfolobus solfataricus [TaxId:2287] [337247] (2 PDB entries)
    1. Domain for 5ufe:
    2. Domains for 5ufq:
      1. 2293952Domain d5ufqd_: 5ufq D: [337253]
        Other proteins in same PDB: d5ufqa_, d5ufqb_
        automated match to d1bbxc_
        complexed with ca, cd, cl, gnp, mg
      2. 2294071Domain d5ufqc_: 5ufq C: [337372]
        Other proteins in same PDB: d5ufqa_, d5ufqb_
        automated match to d1bbxc_
        complexed with ca, cd, cl, gnp, mg

More info for Protein automated matches from b.34.13.1: "Histone-like" proteins from archaea

Timeline for Protein automated matches from b.34.13.1: "Histone-like" proteins from archaea: