Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2217451Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds)
  3. 2222239Fold e.19: HydA/Nqo6-like [56769] (1 superfamily)
    2 domains: (1) alpa/beta; (2) Fe-S cluster-bound
  4. 2222240Superfamily e.19.1: HydA/Nqo6-like [56770] (3 families) (S)
  5. 2222241Family e.19.1.1: Nickel-iron hydrogenase, small subunit [56771] (2 protein domains)
  6. 2222271Protein automated matches [190110] (7 species)
    not a true protein

Species:

  1. 2222272Desulfomicrobium baculatum [TaxId:899] [226720] (6 PDB entries)
    1. Domains for 4kl8:
      1. 2222275Domain d4kl8s_: 4kl8 S: [224353]
        Other proteins in same PDB: d4kl8l_, d4kl8m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2222276Domain d4kl8t_: 4kl8 T: [224354]
        Other proteins in same PDB: d4kl8l_, d4kl8m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    2. Domains for 4kn9:
      1. 2222273Domain d4kn9s_: 4kn9 S: [224405]
        Other proteins in same PDB: d4kn9l_, d4kn9m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2222274Domain d4kn9t_: 4kn9 T: [224406]
        Other proteins in same PDB: d4kn9l_, d4kn9m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    3. Domains for 4ko1:
      1. 2222277Domain d4ko1s_: 4ko1 S: [224417]
        Other proteins in same PDB: d4ko1l_, d4ko1m_
        automated match to d1cc1s_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 2222278Domain d4ko1t_: 4ko1 T: [224418]
        Other proteins in same PDB: d4ko1l_, d4ko1m_
        automated match to d1cc1s_
        complexed with ca, fco, gol, h2s, ni, sf4
    4. Domains for 4ko2:
      1. 2222279Domain d4ko2s_: 4ko2 S: [224421]
        Other proteins in same PDB: d4ko2l_, d4ko2m_
        automated match to d1cc1s_
        complexed with ca, fco, gol, h2s, ni, sf4
      2. 2222280Domain d4ko2t_: 4ko2 T: [224422]
        Other proteins in same PDB: d4ko2l_, d4ko2m_
        automated match to d1cc1s_
        complexed with ca, fco, gol, h2s, ni, sf4
    5. Domains for 4ko3:
      1. 2222281Domain d4ko3s_: 4ko3 S: [224425]
        Other proteins in same PDB: d4ko3l_, d4ko3m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2222282Domain d4ko3t_: 4ko3 T: [224426]
        Other proteins in same PDB: d4ko3l_, d4ko3m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
    6. Domains for 4ko4:
      1. 2222283Domain d4ko4s_: 4ko4 S: [224429]
        Other proteins in same PDB: d4ko4l_, d4ko4m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
      2. 2222284Domain d4ko4t_: 4ko4 T: [224430]
        Other proteins in same PDB: d4ko4l_, d4ko4m_
        automated match to d1cc1s_
        complexed with ca, cl, fco, gol, h2s, ni, sf4
  2. 2222285Desulfovibrio fructosivorans [TaxId:596151] [270655] (4 PDB entries)
    1. Domains for 4ud2:
      1. 2222298Domain d4ud2a_: 4ud2 A: [270658]
        Other proteins in same PDB: d4ud2q_, d4ud2r_, d4ud2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222299Domain d4ud2b_: 4ud2 B: [270662]
        Other proteins in same PDB: d4ud2q_, d4ud2r_, d4ud2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222300Domain d4ud2c_: 4ud2 C: [270665]
        Other proteins in same PDB: d4ud2q_, d4ud2r_, d4ud2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
    2. Domains for 4ud6:
      1. 2222295Domain d4ud6a_: 4ud6 A: [270657]
        Other proteins in same PDB: d4ud6q_, d4ud6r_, d4ud6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222296Domain d4ud6b_: 4ud6 B: [270663]
        Other proteins in same PDB: d4ud6q_, d4ud6r_, d4ud6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222297Domain d4ud6c_: 4ud6 C: [270656]
        Other proteins in same PDB: d4ud6q_, d4ud6r_, d4ud6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
    3. Domains for 4ueq:
      1. 2222286Domain d4ueqa_: 4ueq A: [270691]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      2. 2222287Domain d4ueqb_: 4ueq B: [270685]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      3. 2222288Domain d4ueqc_: 4ueq C: [270690]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      4. 2222289Domain d4ueqd_: 4ueq D: [270695]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      5. 2222290Domain d4ueqe_: 4ueq E: [270689]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
      6. 2222291Domain d4ueqf_: 4ueq F: [270693]
        Other proteins in same PDB: d4ueqq_, d4ueqr_, d4ueqs_, d4ueqt_, d4uequ_, d4ueqv_
        automated match to d4urhc_
        complexed with ca, co3, f3s, fco, gol, h2s, mg, ni, sf4; mutant
    4. Domains for 4uew:
      1. 2222292Domain d4uewa_: 4uew A: [270700]
        Other proteins in same PDB: d4uewq_, d4uewr_, d4uews_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222293Domain d4uewb_: 4uew B: [270701]
        Other proteins in same PDB: d4uewq_, d4uewr_, d4uews_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222294Domain d4uewc_: 4uew C: [270704]
        Other proteins in same PDB: d4uewq_, d4uewr_, d4uews_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
  3. 2222301Desulfovibrio fructosivorans [TaxId:878] [269393] (2 PDB entries)
    1. Domains for 4ucw:
      1. 2222305Domain d4ucwa_: 4ucw A: [269394]
        Other proteins in same PDB: d4ucwq_, d4ucwr_, d4ucws_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2222306Domain d4ucwb_: 4ucw B: [269397]
        Other proteins in same PDB: d4ucwq_, d4ucwr_, d4ucws_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2222307Domain d4ucwc_: 4ucw C: [269404]
        Other proteins in same PDB: d4ucwq_, d4ucwr_, d4ucws_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    2. Domains for 4ucx:
      1. 2222302Domain d4ucxa_: 4ucx A: [269402]
        Other proteins in same PDB: d4ucxq_, d4ucxr_, d4ucxs_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2222303Domain d4ucxb_: 4ucx B: [269396]
        Other proteins in same PDB: d4ucxq_, d4ucxr_, d4ucxs_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2222304Domain d4ucxc_: 4ucx C: [269403]
        Other proteins in same PDB: d4ucxq_, d4ucxr_, d4ucxs_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
  4. 2222308Desulfovibrio fructosovorans [TaxId:878] [188149] (12 PDB entries)
    1. Domains for 1yqw:
      1. 2222318Domain d1yqwa_: 1yqw A: [162279]
        Other proteins in same PDB: d1yqwq_, d1yqwr_, d1yqws_
        automated match to d1frfs_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      2. 2222319Domain d1yqwb_: 1yqw B: [162280]
        Other proteins in same PDB: d1yqwq_, d1yqwr_, d1yqws_
        automated match to d1frfs_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
      3. 2222320Domain d1yqwc_: 1yqw C: [162281]
        Other proteins in same PDB: d1yqwq_, d1yqwr_, d1yqws_
        automated match to d1frfs_
        complexed with bct, f3s, fco, fe2, gol, mg, ni, per, sf4
    2. Domains for 1yrq:
      1. 2222324Domain d1yrqa_: 1yrq A: [162286]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
      2. 2222325Domain d1yrqb_: 1yrq B: [162287]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
      3. 2222326Domain d1yrqc_: 1yrq C: [162288]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
      4. 2222327Domain d1yrqd_: 1yrq D: [162289]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
      5. 2222328Domain d1yrqf_: 1yrq F: [162290]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
      6. 2222329Domain d1yrqg_: 1yrq G: [162291]
        Other proteins in same PDB: d1yrqh_, d1yrqi_, d1yrqj_, d1yrqk_, d1yrqm_, d1yrqn_
        automated match to d1frfs_
        complexed with f3s, fco, mg, ni, sf4
    3. Domains for 3cur:
      1. 2222330Domain d3cura_: 3cur A: [173472]
        Other proteins in same PDB: d3curh_, d3curi_, d3curj_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      2. 2222331Domain d3curb_: 3cur B: [173473]
        Other proteins in same PDB: d3curh_, d3curi_, d3curj_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
      3. 2222332Domain d3curc_: 3cur C: [173474]
        Other proteins in same PDB: d3curh_, d3curi_, d3curj_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, per, sf4; mutant
    4. Domains for 3cus:
      1. 2222333Domain d3cusa_: 3cus A: [173478]
        Other proteins in same PDB: d3cusq_, d3cusr_, d3cuss_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2222334Domain d3cusb_: 3cus B: [173479]
        Other proteins in same PDB: d3cusq_, d3cusr_, d3cuss_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2222335Domain d3cusc_: 3cus C: [173480]
        Other proteins in same PDB: d3cusq_, d3cusr_, d3cuss_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    5. Domains for 3h3x:
      1. 2222339Domain d3h3xa_: 3h3x A: [177169]
        Other proteins in same PDB: d3h3xq_, d3h3xr_, d3h3xs_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      2. 2222340Domain d3h3xb_: 3h3x B: [177170]
        Other proteins in same PDB: d3h3xq_, d3h3xr_, d3h3xs_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
      3. 2222341Domain d3h3xc_: 3h3x C: [177171]
        Other proteins in same PDB: d3h3xq_, d3h3xr_, d3h3xs_
        automated match to d1frfs_
        complexed with f3s, fco, gol, mg, ni, sf4; mutant
    6. Domains for 4ue2:
      1. 2222336Domain d4ue2a_: 4ue2 A: [270687]
        Other proteins in same PDB: d4ue2q_, d4ue2r_, d4ue2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222337Domain d4ue2b_: 4ue2 B: [270683]
        Other proteins in same PDB: d4ue2q_, d4ue2r_, d4ue2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222338Domain d4ue2c_: 4ue2 C: [270688]
        Other proteins in same PDB: d4ue2q_, d4ue2r_, d4ue2s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
    7. Domains for 4ue6:
      1. 2222342Domain d4ue6a_: 4ue6 A: [270674]
        Other proteins in same PDB: d4ue6q_, d4ue6r_, d4ue6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222343Domain d4ue6b_: 4ue6 B: [270675]
        Other proteins in same PDB: d4ue6q_, d4ue6r_, d4ue6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222344Domain d4ue6c_: 4ue6 C: [270680]
        Other proteins in same PDB: d4ue6q_, d4ue6r_, d4ue6s_
        automated match to d4urhc_
        complexed with f3s, fco, gol, mg, ni, sf4
    8. Domains for 4upe:
      1. 2222321Domain d4upea_: 4upe A: [260826]
        Other proteins in same PDB: d4upeq_, d4uper_, d4upes_
        automated match to d1ubks_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
      2. 2222322Domain d4upeb_: 4upe B: [260827]
        Other proteins in same PDB: d4upeq_, d4uper_, d4upes_
        automated match to d1ubks_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
      3. 2222323Domain d4upec_: 4upe C: [263988]
        Other proteins in same PDB: d4upeq_, d4uper_, d4upes_
        automated match to d1ubks_
        complexed with ca, f3s, fco, gol, mes, ni, po4, sf4; mutant
    9. Domains for 4upv:
      1. 2222316Domain d4upva_: 4upv A: [263993]
        Other proteins in same PDB: d4upvq_, d4upvr_
        automated match to d1ubks_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2222317Domain d4upvb_: 4upv B: [263994]
        Other proteins in same PDB: d4upvq_, d4upvr_
        automated match to d1ubks_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    10. Domains for 4uql:
      1. 2222309Domain d4uqla_: 4uql A: [267471]
        Other proteins in same PDB: d4uqlq_, d4uqlr_
        automated match to d1ubks_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2222310Domain d4uqlb_: 4uql B: [267472]
        Other proteins in same PDB: d4uqlq_, d4uqlr_
        automated match to d1ubks_
        complexed with cl, f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    11. Domains for 4uqp:
      1. 2222311Domain d4uqpa_: 4uqp A: [267475]
        Other proteins in same PDB: d4uqpq_, d4uqpr_
        automated match to d1ubks_
        complexed with f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
      2. 2222312Domain d4uqpb_: 4uqp B: [267476]
        Other proteins in same PDB: d4uqpq_, d4uqpr_
        automated match to d1ubks_
        complexed with f3s, fco, gly, gol, h2s, mg, ni, sf4, sot; mutant
    12. Domains for 4urh:
      1. 2222313Domain d4urha_: 4urh A: [263996]
        Other proteins in same PDB: d4urhq_, d4urhr_, d4urhs_
        automated match to d1ubks_
        complexed with f3s, fco, gol, mg, ni, sf4
      2. 2222314Domain d4urhb_: 4urh B: [263997]
        Other proteins in same PDB: d4urhq_, d4urhr_, d4urhs_
        automated match to d1ubks_
        complexed with f3s, fco, gol, mg, ni, sf4
      3. 2222315Domain d4urhc_: 4urh C: [263998]
        Other proteins in same PDB: d4urhq_, d4urhr_, d4urhs_
        automated match to d1ubks_
        complexed with f3s, fco, gol, mg, ni, sf4
  5. 2222345Desulfovibrio gigas [TaxId:879] [186883] (1 PDB entry)
  6. 2222348Desulfovibrio vulgaris [TaxId:882] [197352] (11 PDB entries)
    1. Domain for 2wpn:
    2. Domain for 3ze6:
    3. Domain for 3ze7:
    4. Domain for 3ze8:
    5. Domain for 3ze9:
    6. Domain for 3zea:
    7. Domain for 5jsh:
    8. Domain for 5jsk:
    9. Domain for 5jsu:
    10. Domain for 5jsy:
    11. Domain for 5jt1:
  7. 2222355Desulfovibrio vulgaris [TaxId:883] [186834] (7 PDB entries)
    1. Domain for 1wuh:
    2. Domain for 1wui:
    3. Domain for 1wuj:
    4. Domain for 1wuk:
    5. Domain for 1wul:
    6. Domain for 4u9h:
    7. Domain for 4u9i:

More info for Protein automated matches from e.19.1.1: Nickel-iron hydrogenase, small subunit

Timeline for Protein automated matches from e.19.1.1: Nickel-iron hydrogenase, small subunit: