SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2004058Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
    multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies
  4. 2004059Superfamily a.102.1: Six-hairpin glycosidases [48208] (10 families) (S)
  5. 2004283Family a.102.1.0: automated matches [191318] (1 protein)
    not a true family
  6. 2004284Protein automated matches [190108] (16 species)
    not a true protein

Species:

  1. 2004285Anabaena sp. [TaxId:360069] [230753] (1 PDB entry)
  2. 2004288Bacillus halodurans [TaxId:272558] [186832] (1 PDB entry)
  3. 2004290Clostridium acetobutylicum [TaxId:272562] [274794] (1 PDB entry)
  4. 2004293Clostridium cellulovorans [TaxId:1493] [256855] (3 PDB entries)
    1. Domain for 4xwl:
    2. Domain for 4xwm:
    3. Domain for 4xwn:
  5. 2004297Clostridium thermocellum [TaxId:1515] [255683] (1 PDB entry)
  6. 2004299Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [189664] (3 PDB entries)
    1. Domains for 3qpf:
      1. 2004304Domain d3qpfa_: 3qpf A: [184553]
        automated match to d2nvpa1
        complexed with edo
      2. 2004305Domain d3qpfb_: 3qpf B: [184554]
        automated match to d2nvpa1
        complexed with edo
    2. Domains for 3qry:
      1. 2004300Domain d3qrya_: 3qry A: [184599]
        automated match to d2nvpa1
        complexed with dmj, edo
      2. 2004301Domain d3qryb_: 3qry B: [184600]
        automated match to d2nvpa1
        complexed with dmj, edo
    3. Domains for 3qsp:
      1. 2004302Domain d3qspa_: 3qsp A: [184611]
        automated match to d2nvpa1
        complexed with edo
      2. 2004303Domain d3qspb_: 3qsp B: [184612]
        automated match to d2nvpa1
        complexed with edo
  7. 2004306Rhodothermus marinus [TaxId:29549] [230219] (4 PDB entries)
    1. Domain for 3wkf:
    2. Domain for 3wkg:
    3. Domain for 3wkh:
    4. Domain for 3wki:
  8. 2004311Streptococcus agalactiae [TaxId:1311] [225654] (1 PDB entry)
  9. 2004313Streptococcus agalactiae [TaxId:211110] [226492] (2 PDB entries)
    1. Domains for 3vxd:
      1. 2004314Domain d3vxda_: 3vxd A: [218140]
        automated match to d2fv1a_
        complexed with so4; mutant
      2. 2004315Domain d3vxdb_: 3vxd B: [218141]
        automated match to d2fv1a_
        complexed with so4; mutant
      3. 2004316Domain d3vxdc_: 3vxd C: [218142]
        automated match to d2fv1a_
        complexed with so4; mutant
      4. 2004317Domain d3vxdd_: 3vxd D: [218143]
        automated match to d2fv1a_
        complexed with so4; mutant
    2. Domain for 3wux:
  10. 2004319Streptococcus agalactiae [TaxId:216495] [225979] (3 PDB entries)
    1. Domain for 3ani:
    2. Domain for 3anj:
    3. Domain for 3ank:
  11. 2004323Worm (Eisenia fetida) [TaxId:6396] [256152] (1 PDB entry)
  12. 2272250Caldicellulosiruptor saccharolyticus [TaxId:351627] [315551] (2 PDB entries)
    1. Domain for 4z4j:
    2. Domain for 4z4l:
  13. 2275857Perinereis brevicirris [TaxId:6356] [319158] (2 PDB entries)
    1. Domains for 4zg8:
      1. 2275858Domain d4zg8a_: 4zg8 A: [319159]
        automated match to d1ia6a_
        complexed with btb, ca, cl, na
      2. 2275888Domain d4zg8b_: 4zg8 B: [319189]
        automated match to d1ia6a_
        complexed with btb, ca, cl, na
    2. Domains for 4zh5:
      1. 2275878Domain d4zh5b_: 4zh5 B: [319179]
        automated match to d1ia6a_
        complexed with bgc, ca, cl, na
      2. 2275884Domain d4zh5a_: 4zh5 A: [319185]
        automated match to d1ia6a_
        complexed with bgc, ca, cl, na
  14. 2277006Raoultella ornithinolytica [TaxId:54291] [320307] (1 PDB entry)
  15. 2284030Klebsiella pneumoniae [TaxId:573] [327331] (1 PDB entry)
  16. 2286981Paenibacillus sp. [TaxId:1392929] [330282] (1 PDB entry)

More info for Protein automated matches from a.102.1.0: automated matches

Timeline for Protein automated matches from a.102.1.0: automated matches: