SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein automated matches [190099] (19 species)
not a true protein

Species:

Bacillus cereus [TaxId:1396] [254917] (3 PDB entries)
1. Domain for 1ven:
  - Domain d1vena2: 1ven A:1-417 [120024]
    Other proteins in same PDB: d1vena1
    automated match to d1vema2
    complexed with ca, glc
2. Domain for 1veo:
  - Domain d1veoa2: 1veo A:1-417 [120026]
    Other proteins in same PDB: d1veoa1
    automated match to d1vema2
    complexed with ca, glc
3. Domain for 1vep:
  - Domain d1vepa2: 1vep A:1-417 [120028]
    Other proteins in same PDB: d1vepa1
    automated match to d1vema2
    complexed with ca
Bacillus halmapalus [TaxId:79882] [255187] (2 PDB entries)
1. Domain for 2gjp:
  - Domain d2gjpa2: 2gjp A:5-395 [135284]
    Other proteins in same PDB: d2gjpa1
    automated match to d1ud2a2
    complexed with ca, glc, mal, na
2. Domain for 2gjr:
  - Domain d2gjra2: 2gjr A:5-395 [135286]
    Other proteins in same PDB: d2gjra1
    automated match to d1ud2a2
    complexed with act, ca, na
Bacillus sp. [225222] (1 PDB entry)
- Domain for 2die:
  - Domain d2diea1: 2die A:5-395 [204017]
    Other proteins in same PDB: d2diea2
    automated match to d1ud2a2
    complexed with ca, na
Bacillus sp. [TaxId:535911] [225472] (1 PDB entry)
- Domain for 3dc0:
  - Domain d3dc0a1: 3dc0 A:4-347 [209069]
    Other proteins in same PDB: d3dc0a2
    automated match to d1baga2
    complexed with ca
Bacillus subtilis [TaxId:224308] [228099] (4 PDB entries)
1. Domains for 4m56:
  1. Domain d4m56a1: 4m56 A:3-482 [228100]
    Other proteins in same PDB: d4m56a2, d4m56b2
    automated match to d1uoka2
    complexed with glo, gol, so4
  2. Domain d4m56b1: 4m56 B:3-482 [235529]
    Other proteins in same PDB: d4m56a2, d4m56b2
    automated match to d4m56a1
    complexed with glo, gol, so4
2. Domain for 4m8u:
  - Domain d4m8ua1: 4m8u A:2-482 [229319]
    Other proteins in same PDB: d4m8ua2
    automated match to d1uoka2
    complexed with ca, gol, trs; mutant
3. Domain for 4maz:
  - Domain d4maza1: 4maz A:3-482 [229323]
    Other proteins in same PDB: d4maza2
    automated match to d1uoka2
    complexed with gol, mg, trs; mutant
4. Domain for 4mb1:
  - Domain d4mb1a1: 4mb1 A:3-482 [229325]
    Other proteins in same PDB: d4mb1a2
    automated match to d1uoka2
    complexed with ca, trs; mutant
Barley (Hordeum vulgare) [TaxId:4513] [255684] (8 PDB entries)
1. Domain for 2xff:
  - Domain d2xffa_: 2xff A: [244496]
    automated match to d1b1ya_
    complexed with edo, qps
2. Domain for 2xfr:
  - Domain d2xfra_: 2xfr A: [244498]
    automated match to d1b1ya_
    complexed with edo
3. Domain for 2xfy:
  - Domain d2xfya_: 2xfy A: [244499]
    automated match to d1b1ya_
    complexed with acx, edo
4. Domain for 2xg9:
  - Domain d2xg9a_: 2xg9 A: [244500]
    automated match to d1b1ya_
    complexed with edo, glc, noj
5. Domain for 2xgb:
  - Domain d2xgba_: 2xgb A: [244501]
    automated match to d1b1ya_
    complexed with edo, epg
6. Domain for 2xgi:
  - Domain d2xgia_: 2xgi A: [244502]
    automated match to d1b1ya_
    complexed with ebg, ebq, edo
7. Domain for 3bsg:
  - Domain d3bsga2: 3bsg A:1-347 [155526]
    Other proteins in same PDB: d3bsga1
    automated match to d1ht6a2
    complexed with ca; mutant
8. Domain for 3bsh:
  - Domain d3bsha1: 3bsh A:1-347 [245394]
    Other proteins in same PDB: d3bsha2
    automated match to d1ht6a2
    complexed with bgc, ca; mutant
Bifidobacterium adolescentis [TaxId:1680] [255183] (1 PDB entry)
- Domains for 2gdu:
  1. Domain d2gdua2: 2gdu A:1-434 [135033]
    Other proteins in same PDB: d2gdua1, d2gdub1
    automated match to d1r7aa2
    complexed with suc; mutant
  2. Domain d2gdub2: 2gdu B:1-434 [135035]
    Other proteins in same PDB: d2gdua1, d2gdub1
    automated match to d1r7aa2
    complexed with suc; mutant
Flavobacterium sp. [TaxId:197856] [255816] (5 PDB entries)
1. Domains for 3edd:
  1. Domain d3edda2: 3edd A:96-517 [245826]
    Other proteins in same PDB: d3edda1, d3edda3, d3eddb1, d3eddb3
    automated match to d1h3ga3
    complexed with acx, ca
  2. Domain d3eddb2: 3edd B:96-517 [245829]
    Other proteins in same PDB: d3edda1, d3edda3, d3eddb1, d3eddb3
    automated match to d1h3ga3
    complexed with acx, ca
2. Domains for 3ede:
  1. Domain d3edea2: 3ede A:96-517 [245832]
    Other proteins in same PDB: d3edea1, d3edea3, d3edeb1, d3edeb3
    automated match to d1h3ga3
    complexed with ca, gol
  2. Domain d3edeb2: 3ede B:96-517 [245835]
    Other proteins in same PDB: d3edea1, d3edea3, d3edeb1, d3edeb3
    automated match to d1h3ga3
    complexed with ca, gol
3. Domains for 3edf:
  1. Domain d3edfa2: 3edf A:96-517 [245838]
    Other proteins in same PDB: d3edfa1, d3edfa3, d3edfb1, d3edfb3
    automated match to d1h3ga3
    complexed with acx, ca, ce6, gol
  2. Domain d3edfb2: 3edf B:96-517 [245841]
    Other proteins in same PDB: d3edfa1, d3edfa3, d3edfb1, d3edfb3
    automated match to d1h3ga3
    complexed with acx, ca, ce6, gol
4. Domains for 3edj:
  1. Domain d3edja2: 3edj A:96-517 [245844]
    Other proteins in same PDB: d3edja1, d3edja3, d3edjb1, d3edjb3
    automated match to d1h3ga3
    complexed with bcd, ca, gol
  2. Domain d3edjb2: 3edj B:96-517 [245847]
    Other proteins in same PDB: d3edja1, d3edja3, d3edjb1, d3edjb3
    automated match to d1h3ga3
    complexed with bcd, ca, gol
5. Domains for 3edk:
  1. Domain d3edka2: 3edk A:96-517 [245850]
    Other proteins in same PDB: d3edka1, d3edka3, d3edkb1, d3edkb3
    automated match to d1h3ga3
    complexed with ca, ce8, gol
  2. Domain d3edkb2: 3edk B:96-517 [245853]
    Other proteins in same PDB: d3edka1, d3edka3, d3edkb1, d3edkb3
    automated match to d1h3ga3
    complexed with ca, ce8, gol
Human (Homo sapiens) [TaxId:9606] [225770] (13 PDB entries)
1. Domain for 1xgz:
  - Domain d1xgza2: 1xgz A:1-408 [121988]
    Other proteins in same PDB: d1xgza1
    automated match to d1jxka2
    complexed with ca, nag
2. Domain for 1xh0:
  - Domain d1xh0a2: 1xh0 A:1-408 [121990]
    Other proteins in same PDB: d1xh0a1
    automated match to d1jxka2
    complexed with aao, nag
3. Domain for 1xh1:
  - Domain d1xh1a2: 1xh1 A:1-408 [121992]
    Other proteins in same PDB: d1xh1a1
    automated match to d1jxka2
    complexed with ca, cl, nag
4. Domain for 1xh2:
  - Domain d1xh2a2: 1xh2 A:1-408 [121994]
    Other proteins in same PDB: d1xh2a1
    automated match to d1jxka2
    complexed with are, ca, cl, nag
5. Domains for 1xv8:
  1. Domain d1xv8a2: 1xv8 A:1-408 [122341]
    Other proteins in same PDB: d1xv8a1, d1xv8b1
    automated match to d1jxka2
    complexed with ca, cl
  2. Domain d1xv8b2: 1xv8 B:1-408 [122343]
    Other proteins in same PDB: d1xv8a1, d1xv8b1
    automated match to d1jxka2
    complexed with ca, cl
6. Domain for 3dhp:
  - Domain d3dhpa2: 3dhp A:1-408 [157726]
    Other proteins in same PDB: d3dhpa1
    automated match to d1jxka2
    complexed with ca, cl, glc, hmc
7. Domains for 3h53:
  1. Domain d3h53a1: 3h53 A:18-309 [210879]
    Other proteins in same PDB: d3h53a2, d3h53b2
    automated match to d1ktba2
    complexed with gol, nag
  2. Domain d3h53b1: 3h53 B:18-309 [210881]
    Other proteins in same PDB: d3h53a2, d3h53b2
    automated match to d1ktba2
    complexed with gol, nag
8. Domains for 3h54:
  1. Domain d3h54a1: 3h54 A:18-309 [210883]
    Other proteins in same PDB: d3h54a2, d3h54b2
    automated match to d1ktba2
    complexed with a2g, gol, nag
  2. Domain d3h54b1: 3h54 B:18-309 [210885]
    Other proteins in same PDB: d3h54a2, d3h54b2
    automated match to d1ktba2
    complexed with a2g, gol, nag
9. Domains for 3h55:
  1. Domain d3h55a1: 3h55 A:18-309 [210887]
    Other proteins in same PDB: d3h55a2, d3h55b2
    automated match to d1ktba2
    complexed with cit, gla, nag
  2. Domain d3h55b1: 3h55 B:18-309 [210889]
    Other proteins in same PDB: d3h55a2, d3h55b2
    automated match to d1ktba2
    complexed with cit, gla, nag
10. Domains for 3igu:
  1. Domain d3igua1: 3igu A:18-309 [211679]
    Other proteins in same PDB: d3igua2, d3igub2
    automated match to d1ktba2
    complexed with 7jz, gol, nag
  2. Domain d3igub1: 3igu B:18-309 [211681]
    Other proteins in same PDB: d3igua2, d3igub2
    automated match to d1ktba2
    complexed with 7jz, gol, nag
11. Domains for 4do4:
  1. Domain d4do4a1: 4do4 A:18-309 [219884]
    Other proteins in same PDB: d4do4a2, d4do4b2
    automated match to d1ktba2
    complexed with acy, cit, djn, gol, nag
  2. Domain d4do4b1: 4do4 B:18-309 [219886]
    Other proteins in same PDB: d4do4a2, d4do4b2
    automated match to d1ktba2
    complexed with acy, cit, djn, gol, nag
12. Domains for 4do5:
  1. Domain d4do5a1: 4do5 A:18-309 [219888]
    Other proteins in same PDB: d4do5a2, d4do5b2
    automated match to d1ktba2
    complexed with cit, dgj, gol, nag
  2. Domain d4do5b1: 4do5 B:18-309 [219890]
    Other proteins in same PDB: d4do5a2, d4do5b2
    automated match to d1ktba2
    complexed with cit, dgj, gol, nag
13. Domains for 4do6:
  1. Domain d4do6a1: 4do6 A:18-309 [219892]
    Other proteins in same PDB: d4do6a2, d4do6b2
    automated match to d1ktba2
    complexed with 2pe, bgc, cit, glc, nag
  2. Domain d4do6b1: 4do6 B:18-309 [219894]
    Other proteins in same PDB: d4do6a2, d4do6b2
    automated match to d1ktba2
    complexed with 2pe, bgc, cit, glc, nag
Neisseria polysaccharea [TaxId:489] [226280] (5 PDB entries)
1. Domain for 3ueq:
  - Domain d3ueqa1: 3ueq A:-3-554 [233787]
    Other proteins in same PDB: d3ueqa2
    automated match to d1g5aa2
    complexed with btu, otu, peg
2. Domain for 4flo:
  - Domain d4floa1: 4flo A:1-554 [221267]
    Other proteins in same PDB: d4floa2
    automated match to d1g5aa2
    complexed with gol, p6g, trs; mutant
3. Domain for 4flq:
  - Domain d4flqa1: 4flq A:1-554 [221269]
    Other proteins in same PDB: d4flqa2
    automated match to d1g5aa2
    complexed with gol, pg4, pge, trs; mutant
4. Domain for 4flr:
  - Domain d4flra1: 4flr A:1-554 [221271]
    Other proteins in same PDB: d4flra2
    automated match to d1g5aa2
    complexed with 1pe, gol, trs; mutant
5. Domain for 4fls:
  - Domain d4flsa1: 4fls A:1-554 [221273]
    Other proteins in same PDB: d4flsa2
    automated match to d1g5aa2
    complexed with cl, gol, suc; mutant
Oryzias latipes [TaxId:8090] [226401] (1 PDB entry)
- Domain for 3vm5:
  - Domain d3vm5a1: 3vm5 A:1-404 [217938]
    Other proteins in same PDB: d3vm5a2
    automated match to d1smda2
    complexed with ca, cl
Pig (Sus scrofa) [TaxId:9823] [225875] (3 PDB entries)
1. Domain for 1vah:
  - Domain d1vaha2: 1vah A:1-408 [119906]
    Other proteins in same PDB: d1vaha1
    automated match to d1jxka2
    complexed with ca, cl, npo
2. Domain for 3l2l:
  - Domain d3l2la1: 3l2l A:1-403 [212731]
    Other proteins in same PDB: d3l2la2
    automated match to d1jfha2
    complexed with ca, cl, glc
3. Domain for 3l2m:
  - Domain d3l2ma1: 3l2m A:1-403 [212733]
    Other proteins in same PDB: d3l2ma2
    automated match to d1jfha2
    complexed with ca, cl
Protaminobacter rubrum [TaxId:126825] [225680] (2 PDB entries)
1. Domain for 3gbd:
  - Domain d3gbda1: 3gbd A:16-493 [210475]
    Other proteins in same PDB: d3gbda2
    automated match to d1m53a2
    complexed with edo, flc
2. Domain for 3gbe:
  - Domain d3gbea1: 3gbe A:16-493 [210477]
    Other proteins in same PDB: d3gbea2
    automated match to d1m53a2
    complexed with edo, flc, noj
Pseudomonas mesoacidophila [TaxId:265293] [224875] (9 PDB entries)
1. Domains for 1zja:
  1. Domain d1zjaa1: 1zja A:1-478 [203330]
    Other proteins in same PDB: d1zjaa2, d1zjab2
    automated match to d1m53a2
    complexed with ca, trs
  2. Domain d1zjab1: 1zja B:1-478 [203332]
    Other proteins in same PDB: d1zjaa2, d1zjab2
    automated match to d1m53a2
    complexed with ca, trs
2. Domains for 1zjb:
  1. Domain d1zjba1: 1zjb A:2-478 [203334]
    Other proteins in same PDB: d1zjba2, d1zjbb2
    automated match to d1m53a2
    complexed with ca, trs
  2. Domain d1zjbb1: 1zjb B:2-478 [203336]
    Other proteins in same PDB: d1zjba2, d1zjbb2
    automated match to d1m53a2
    complexed with ca, trs
3. Domains for 2pwd:
  1. Domain d2pwda1: 2pwd A:1-478 [205664]
    Other proteins in same PDB: d2pwda2, d2pwdb2
    automated match to d1m53a2
    complexed with ca, noj
  2. Domain d2pwdb1: 2pwd B:1-478 [205666]
    Other proteins in same PDB: d2pwda2, d2pwdb2
    automated match to d1m53a2
    complexed with ca, noj
4. Domains for 2pwe:
  1. Domain d2pwea1: 2pwe A:2-478 [205668]
    Other proteins in same PDB: d2pwea2, d2pweb2
    automated match to d1m53a2
    complexed with ca, suc; mutant
  2. Domain d2pweb1: 2pwe B:2-478 [205670]
    Other proteins in same PDB: d2pwea2, d2pweb2
    automated match to d1m53a2
    complexed with ca, suc; mutant
5. Domains for 2pwf:
  1. Domain d2pwfa1: 2pwf A:3-478 [205672]
    Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
    automated match to d1m53a2
    complexed with bgc, ca; mutant
  2. Domain d2pwfb1: 2pwf B:4-478 [205674]
    Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
    automated match to d1m53a2
    complexed with bgc, ca; mutant
  3. Domain d2pwfc1: 2pwf C:2-478 [205676]
    Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
    automated match to d1m53a2
    complexed with bgc, ca; mutant
  4. Domain d2pwfd1: 2pwf D:2-478 [205678]
    Other proteins in same PDB: d2pwfa2, d2pwfb2, d2pwfc2, d2pwfd2
    automated match to d1m53a2
    complexed with bgc, ca; mutant
6. Domains for 2pwg:
  1. Domain d2pwga1: 2pwg A:2-478 [205680]
    Other proteins in same PDB: d2pwga2, d2pwgb2
    automated match to d1m53a2
    complexed with ca, cts
  2. Domain d2pwgb1: 2pwg B:2-478 [205682]
    Other proteins in same PDB: d2pwga2, d2pwgb2
    automated match to d1m53a2
    complexed with ca, cts
7. Domains for 2pwh:
  1. Domain d2pwha1: 2pwh A:2-478 [205684]
    Other proteins in same PDB: d2pwha2, d2pwhb2
    automated match to d1m53a2
    complexed with ca
  2. Domain d2pwhb1: 2pwh B:2-478 [205686]
    Other proteins in same PDB: d2pwha2, d2pwhb2
    automated match to d1m53a2
    complexed with ca
8. Domains for 4go8:
  1. Domain d4go8a1: 4go8 A:4-478 [222048]
    Other proteins in same PDB: d4go8a2, d4go8b2
    automated match to d1m53a2
    complexed with ca, trs; mutant
  2. Domain d4go8b1: 4go8 B:2-478 [222050]
    Other proteins in same PDB: d4go8a2, d4go8b2
    automated match to d1m53a2
    complexed with ca, trs; mutant
9. Domains for 4go9:
  1. Domain d4go9a1: 4go9 A:3-478 [222052]
    Other proteins in same PDB: d4go9a2, d4go9b2
    automated match to d1m53a2
    complexed with ca, trs; mutant
  2. Domain d4go9b1: 4go9 B:4-478 [222054]
    Other proteins in same PDB: d4go9a2, d4go9b2
    automated match to d1m53a2
    complexed with ca, trs; mutant
Pyrococcus woesei [TaxId:2262] [226292] (1 PDB entry)
- Domain for 3qgv:
  - Domain d3qgva1: 3qgv A:1-361 [215224]
    Other proteins in same PDB: d3qgva2
    automated match to d1mxga2
    complexed with bcd, ca, so4, suc, trs, zn
Soybean (Glycine max) [TaxId:3847] [186821] (2 PDB entries)
1. Domain for 1wdp:
  - Domain d1wdpa_: 1wdp A: [120907]
    automated match to d1btc__
    complexed with so4
2. Domain for 2dqx:
  - Domain d2dqxa_: 2dqx A: [163657]
    automated match to d1btca_
    mutant
Thermoactinomyces vulgaris [TaxId:2026] [254920] (6 PDB entries)
1. Domains for 1vfm:
  1. Domain d1vfma3: 1vfm A:121-502 [120044]
    Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
    automated match to d1ji2a3
    complexed with ca
  2. Domain d1vfmb3: 1vfm B:121-502 [120047]
    Other proteins in same PDB: d1vfma1, d1vfma2, d1vfmb1, d1vfmb2
    automated match to d1ji2a3
    complexed with ca
2. Domains for 1vfo:
  1. Domain d1vfoa3: 1vfo A:121-502 [120050]
    Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
    automated match to d1ji2a3
    complexed with ca
  2. Domain d1vfob3: 1vfo B:121-502 [120053]
    Other proteins in same PDB: d1vfoa1, d1vfoa2, d1vfob1, d1vfob2
    automated match to d1ji2a3
    complexed with ca
3. Domains for 1vfu:
  1. Domain d1vfua3: 1vfu A:121-502 [120057]
    Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
    automated match to d1ji2a3
    complexed with ca
  2. Domain d1vfub3: 1vfu B:121-502 [120060]
    Other proteins in same PDB: d1vfua1, d1vfua2, d1vfub1, d1vfub2
    automated match to d1ji2a3
    complexed with ca
4. Domains for 1wzk:
  1. Domain d1wzka3: 1wzk A:121-502 [121509]
    Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
    automated match to d1ji2a3
    complexed with ca
  2. Domain d1wzkb3: 1wzk B:121-502 [121512]
    Other proteins in same PDB: d1wzka1, d1wzka2, d1wzkb1, d1wzkb2
    automated match to d1ji2a3
    complexed with ca
5. Domains for 1wzl:
  1. Domain d1wzla3: 1wzl A:121-502 [121515]
    Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
    automated match to d1ji2a3
    complexed with ca
  2. Domain d1wzlb3: 1wzl B:121-502 [121518]
    Other proteins in same PDB: d1wzla1, d1wzla2, d1wzlb1, d1wzlb2
    automated match to d1ji2a3
    complexed with ca
6. Domain for 2d0f:
  - Domain d2d0fa3: 2d0f A:123-554 [131066]
    Other proteins in same PDB: d2d0fa1, d2d0fa2
    automated match to d1ji1a3
    complexed with ca, mpd; mutant
Thermus brockianus [TaxId:56956] [189542] (1 PDB entry)
- Domain for 2x1i:
  - Domain d2x1ia_: 2x1i A: [169790]
    automated match to d1cwya_
    complexed with ins, po4, so4
Thermus thermophilus [TaxId:274] [188525] (3 PDB entries)
1. Domain for 2owc:
  - Domain d2owca_: 2owc A: [166873]
    automated match to d1cwya_
    complexed with acr, gol, mli
2. Domain for 2oww:
  - Domain d2owwa_: 2oww A: [166886]
    automated match to d1cwya_
    complexed with acr, g4d, gol, mli
3. Domain for 2owx:
  - Domain d2owxa_: 2owx A: [166887]
    automated match to d1cwya_
    complexed with gol, mli

More info for Protein automated matches from c.1.8.1: Amylase, catalytic domain

Timeline for Protein automated matches from c.1.8.1: Amylase, catalytic domain:

Protein automated matches from c.1.8.1: Amylase, catalytic domain first appeared in SCOPe 2.01
Protein automated matches from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.03
Protein automated matches from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.05
Protein automated matches from c.1.8.1: Amylase, catalytic domain appears in the current release, SCOPe 2.08