Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2085156Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 2086002Family c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) [51594] (2 protein domains)
    hybrid of classes I and II aldolase
    automatically mapped to Pfam PF00490
  6. 2086040Protein automated matches [190088] (5 species)
    not a true protein

Species:

  1. 2086041Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186810] (1 PDB entry)
  2. 2086043Pseudomonas aeruginosa [TaxId:287] [187506] (8 PDB entries)
    1. Domains for 1w54:
      1. 2086055Domain d1w54a_: 1w54 A: [161891]
        automated match to d1gzgb_
        complexed with fmt, k, mg, zn; mutant
      2. 2086056Domain d1w54b_: 1w54 B: [161892]
        automated match to d1gzgb_
        complexed with fmt, k, mg, zn; mutant
    2. Domains for 2c13:
      1. 2086053Domain d2c13a_: 2c13 A: [163211]
        automated match to d1gzgb_
        complexed with cl, k, mg, peg, pge
      2. 2086054Domain d2c13b_: 2c13 B: [163212]
        automated match to d1gzgb_
        complexed with cl, k, mg, peg, pge
    3. Domains for 2c14:
      1. 2086049Domain d2c14a_: 2c14 A: [163213]
        automated match to d1gzgb_
        complexed with mg
      2. 2086050Domain d2c14b_: 2c14 B: [163214]
        automated match to d1gzgb_
        complexed with mg
    4. Domains for 2c15:
      1. 2086044Domain d2c15a_: 2c15 A: [163215]
        automated match to d1gzgb_
        complexed with mg
      2. 2086045Domain d2c15b_: 2c15 B: [163216]
        automated match to d1gzgb_
        complexed with mg
    5. Domains for 2c16:
      1. 2086057Domain d2c16a_: 2c16 A: [163217]
        automated match to d1gzgb_
        complexed with cl, mg, peg, pge
      2. 2086058Domain d2c16b_: 2c16 B: [163218]
        automated match to d1gzgb_
        complexed with cl, mg, peg, pge
    6. Domains for 2c18:
      1. 2086047Domain d2c18a_: 2c18 A: [163219]
        automated match to d1gzgb_
        complexed with cl, mg, na, pge
      2. 2086048Domain d2c18b_: 2c18 B: [163220]
        automated match to d1gzgb_
        complexed with cl, mg, na, pge
    7. Domains for 2c19:
      1. 2086051Domain d2c19a_: 2c19 A: [163221]
        automated match to d1gzgb_
        complexed with mg, na
      2. 2086052Domain d2c19b_: 2c19 B: [163222]
        automated match to d1gzgb_
        complexed with mg, na
    8. Domain for 2woq:
  3. 2086059Pseudomonas aeruginosa, PA01 [TaxId:208964] [188066] (6 PDB entries)
    1. Domains for 1w56:
      1. 2086068Domain d1w56a_: 1w56 A: [161893]
        automated match to d1gzgb_
        complexed with fmt, k, mg, zn; mutant
      2. 2086069Domain d1w56b_: 1w56 B: [161894]
        automated match to d1gzgb_
        complexed with fmt, k, mg, zn; mutant
    2. Domains for 1w5m:
      1. 2086062Domain d1w5ma_: 1w5m A: [161895]
        automated match to d1gzgb_
        complexed with cl, fmt, mg, zn; mutant
      2. 2086063Domain d1w5mb_: 1w5m B: [161896]
        automated match to d1gzgb_
        complexed with cl, fmt, mg, zn; mutant
    3. Domains for 1w5n:
      1. 2086066Domain d1w5na_: 1w5n A: [161897]
        automated match to d1gzgb_
        complexed with cl, fmt, mg, na, zn; mutant
      2. 2086067Domain d1w5nb_: 1w5n B: [161898]
        automated match to d1gzgb_
        complexed with cl, fmt, mg, na, zn; mutant
    4. Domains for 1w5o:
      1. 2086070Domain d1w5oa_: 1w5o A: [161899]
        automated match to d1gzgb_
        complexed with gol, k, mg, zn; mutant
      2. 2086071Domain d1w5ob_: 1w5o B: [161900]
        automated match to d1gzgb_
        complexed with gol, k, mg, zn; mutant
    5. Domains for 1w5p:
      1. 2086064Domain d1w5pa_: 1w5p A: [161901]
        automated match to d1gzgb_
        complexed with edo, fmt, gol, k, mg, so4, zn; mutant
      2. 2086065Domain d1w5pb_: 1w5p B: [161902]
        automated match to d1gzgb_
        complexed with edo, fmt, gol, k, mg, so4, zn; mutant
    6. Domains for 1w5q:
      1. 2086060Domain d1w5qa_: 1w5q A: [161903]
        automated match to d1gzgb_
        complexed with fmt, mg, na, zn; mutant
      2. 2086061Domain d1w5qb_: 1w5q B: [161904]
        automated match to d1gzgb_
        complexed with fmt, mg, na, zn; mutant
  4. 2271765Escherichia coli [TaxId:83333] [315066] (1 PDB entry)
  5. 2283730Escherichia coli [TaxId:562] [327031] (1 PDB entry)

More info for Protein automated matches from c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)

Timeline for Protein automated matches from c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase):

  • Protein automated matches from c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) first appeared in SCOPe 2.01
  • Protein automated matches from c.1.10.3: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) appears in SCOPe 2.05