Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1336838Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1342158Superfamily c.1.10: Aldolase [51569] (9 families) (S)
    Common fold covers whole protein structure
  5. 1342981Family c.1.10.4: Class I DAHP synthetase [51599] (3 proteins)
  6. 1343178Protein automated matches [190083] (7 species)
    not a true protein

Species:

  1. 1343179Aquifex aeolicus [TaxId:63363] [187662] (1 PDB entry)
  2. 1343182Burkholderia pseudomallei [TaxId:320372] [189833] (3 PDB entries)
    1. Domains for 3sz8:
      1. 1343187Domain d3sz8a_: 3sz8 A: [216611]
        automated match to d3unda_
        complexed with act
      2. 1343188Domain d3sz8b_: 3sz8 B: [216612]
        automated match to d3unda_
        complexed with act
      3. 1343189Domain d3sz8c_: 3sz8 C: [216613]
        automated match to d3unda_
        complexed with act
      4. 1343190Domain d3sz8d_: 3sz8 D: [216614]
        automated match to d3unda_
        complexed with act
    2. Domains for 3tmq:
      1. 1343191Domain d3tmqa_: 3tmq A: [200846]
        automated match to d3unda_
        complexed with a5p, edo, no3
      2. 1343192Domain d3tmqb_: 3tmq B: [200847]
        automated match to d3unda_
        complexed with a5p, edo, no3
      3. 1343193Domain d3tmqc_: 3tmq C: [200848]
        automated match to d3unda_
        complexed with a5p, edo, no3
      4. 1343194Domain d3tmqd_: 3tmq D: [193635]
        automated match to d3undb_
        complexed with a5p, edo, no3
    3. Domains for 3und:
      1. 1343183Domain d3unda_: 3und A: [186347]
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      2. 1343184Domain d3undb_: 3und B: [186348]
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      3. 1343185Domain d3undc_: 3und C: [186349]
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
      4. 1343186Domain d3undd_: 3und D: [186350]
        automated match to d1o60a_
        complexed with a5p, edo, kd0, pep
  3. 1343195Neisseria meningitidis [TaxId:122586] [189819] (16 PDB entries)
    1. Domains for 3qpy:
      1. 1343240Domain d3qpya_: 3qpy A: [184557]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      2. 1343241Domain d3qpyb_: 3qpy B: [184558]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      3. 1343242Domain d3qpyc_: 3qpy C: [184559]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      4. 1343243Domain d3qpyd_: 3qpy D: [184560]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
    2. Domains for 3qpz:
      1. 1343200Domain d3qpza_: 3qpz A: [184561]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      2. 1343201Domain d3qpzb_: 3qpz B: [184562]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      3. 1343202Domain d3qpzc_: 3qpz C: [184563]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
      4. 1343203Domain d3qpzd_: 3qpz D: [184564]
        automated match to d1d9ea_
        complexed with cl, gol, na, po4; mutant
    3. Domains for 3qq0:
      1. 1343224Domain d3qq0a_: 3qq0 A: [184565]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      2. 1343225Domain d3qq0b_: 3qq0 B: [184566]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      3. 1343226Domain d3qq0c_: 3qq0 C: [184567]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
      4. 1343227Domain d3qq0d_: 3qq0 D: [184568]
        automated match to d1g7ua_
        complexed with cl, gol, na; mutant
    4. Domains for 3qq1:
      1. 1343256Domain d3qq1a_: 3qq1 A: [184569]
        automated match to d1d9ea_
        mutant
      2. 1343257Domain d3qq1b_: 3qq1 B: [184570]
        automated match to d1d9ea_
        mutant
      3. 1343258Domain d3qq1c_: 3qq1 C: [184571]
        automated match to d1d9ea_
        mutant
      4. 1343259Domain d3qq1d_: 3qq1 D: [184572]
        automated match to d1d9ea_
        mutant
    5. Domains for 3stc:
      1. 1343236Domain d3stca_: 3stc A: [185545]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      2. 1343237Domain d3stcb_: 3stc B: [185546]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      3. 1343238Domain d3stcc_: 3stc C: [185547]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      4. 1343239Domain d3stcd_: 3stc D: [185548]
        automated match to d1d9ea_
        complexed with cl, na; mutant
    6. Domains for 3ste:
      1. 1343244Domain d3stea_: 3ste A: [185549]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      2. 1343245Domain d3steb_: 3ste B: [185550]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      3. 1343246Domain d3stec_: 3ste C: [185551]
        automated match to d1d9ea_
        complexed with cl, na; mutant
      4. 1343247Domain d3sted_: 3ste D: [185552]
        automated match to d1d9ea_
        complexed with cl, na; mutant
    7. Domains for 3stf:
      1. 1343228Domain d3stfa_: 3stf A: [185553]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      2. 1343229Domain d3stfb_: 3stf B: [185554]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      3. 1343230Domain d3stfc_: 3stf C: [185555]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
      4. 1343231Domain d3stfd_: 3stf D: [185556]
        automated match to d1d9ea_
        complexed with cl, gol, na; mutant
    8. Domains for 3stg:
      1. 1343252Domain d3stga_: 3stg A: [185557]
        automated match to d1d9ea_
        complexed with cl; mutant
      2. 1343253Domain d3stgb_: 3stg B: [185558]
        automated match to d1d9ea_
        complexed with cl; mutant
      3. 1343254Domain d3stgc_: 3stg C: [185559]
        automated match to d1d9ea_
        complexed with cl; mutant
      4. 1343255Domain d3stgd_: 3stg D: [185560]
        automated match to d1d9ea_
        complexed with cl; mutant
    9. Domains for 4jte:
      1. 1343232Domain d4jtea_: 4jte A: [223992]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 1343233Domain d4jteb_: 4jte B: [223993]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 1343234Domain d4jtec_: 4jte C: [223994]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 1343235Domain d4jted_: 4jte D: [223995]
        automated match to d3undc_
        complexed with cl, na; mutant
    10. Domains for 4jtf:
      1. 1343212Domain d4jtfa_: 4jtf A: [223996]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 1343213Domain d4jtfb_: 4jtf B: [223997]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 1343214Domain d4jtfc_: 4jtf C: [223998]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 1343215Domain d4jtfd_: 4jtf D: [223999]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    11. Domains for 4jtg:
      1. 1343204Domain d4jtga_: 4jtg A: [224000]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 1343205Domain d4jtgb_: 4jtg B: [224001]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 1343206Domain d4jtgc_: 4jtg C: [224002]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 1343207Domain d4jtgd_: 4jtg D: [224003]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    12. Domains for 4jth:
      1. 1343220Domain d4jtha_: 4jth A: [224004]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      2. 1343221Domain d4jthb_: 4jth B: [224005]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      3. 1343222Domain d4jthc_: 4jth C: [224006]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
      4. 1343223Domain d4jthd_: 4jth D: [224007]
        automated match to d3undc_
        complexed with cl, gol, na; mutant
    13. Domains for 4jti:
      1. 1343196Domain d4jtia_: 4jti A: [224008]
        automated match to d3unda_
        complexed with cl; mutant
      2. 1343197Domain d4jtib_: 4jti B: [224009]
        automated match to d3unda_
        complexed with cl; mutant
      3. 1343198Domain d4jtic_: 4jti C: [224010]
        automated match to d3unda_
        complexed with cl; mutant
      4. 1343199Domain d4jtid_: 4jti D: [224011]
        automated match to d3unda_
        complexed with cl; mutant
    14. Domains for 4jtj:
      1. 1343208Domain d4jtja_: 4jtj A: [224012]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 1343209Domain d4jtjb_: 4jtj B: [224013]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 1343210Domain d4jtjc_: 4jtj C: [224014]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 1343211Domain d4jtjd_: 4jtj D: [224015]
        automated match to d3undc_
        complexed with cl, na; mutant
    15. Domains for 4jtk:
      1. 1343216Domain d4jtka_: 4jtk A: [224016]
        automated match to d3undc_
        complexed with cl, na; mutant
      2. 1343217Domain d4jtkb_: 4jtk B: [224017]
        automated match to d3undc_
        complexed with cl, na; mutant
      3. 1343218Domain d4jtkc_: 4jtk C: [224018]
        automated match to d3undc_
        complexed with cl, na; mutant
      4. 1343219Domain d4jtkd_: 4jtk D: [224019]
        automated match to d3undc_
        complexed with cl, na; mutant
    16. Domains for 4jtl:
      1. 1343248Domain d4jtla_: 4jtl A: [224020]
        automated match to d3tmqd_
        complexed with cl; mutant
      2. 1343249Domain d4jtlb_: 4jtl B: [224021]
        automated match to d3tmqd_
        complexed with cl; mutant
      3. 1343250Domain d4jtlc_: 4jtl C: [224022]
        automated match to d3tmqd_
        complexed with cl; mutant
      4. 1343251Domain d4jtld_: 4jtl D: [224023]
        automated match to d3tmqd_
        complexed with cl; mutant
  4. 1343260Neisseria meningitidis [TaxId:491] [188836] (2 PDB entries)
    1. Domains for 3fyo:
      1. 1343265Domain d3fyoa_: 3fyo A: [176143]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      2. 1343266Domain d3fyob_: 3fyo B: [176144]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      3. 1343267Domain d3fyoc_: 3fyo C: [176145]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
      4. 1343268Domain d3fyod_: 3fyo D: [176146]
        automated match to d1d9ea_
        complexed with cl, mn, na, pep; mutant
    2. Domains for 3fyp:
      1. 1343261Domain d3fypa_: 3fyp A: [176147]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      2. 1343262Domain d3fypb_: 3fyp B: [176148]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      3. 1343263Domain d3fypc_: 3fyp C: [176149]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
      4. 1343264Domain d3fypd_: 3fyp D: [176150]
        automated match to d1d9ea_
        complexed with cl, gol, mn, na, pep; mutant
  5. 1343269Pseudomonas aeruginosa [TaxId:20894] [228239] (1 PDB entry)
  6. 1343274Thermotoga maritima [TaxId:2336] [186804] (3 PDB entries)
    1. Domains for 1vr6:
      1. 1343275Domain d1vr6a_: 1vr6 A: [120439]
        automated match to d1rzma_
      2. 1343276Domain d1vr6b_: 1vr6 B: [120440]
        automated match to d1rzma_
      3. 1343277Domain d1vr6c_: 1vr6 C: [120441]
        automated match to d1rzma_
      4. 1343278Domain d1vr6d_: 1vr6 D: [120442]
        automated match to d1rzma_
    2. Domains for 3pg8:
      1. 1343279Domain d3pg8a_: 3pg8 A: [214765]
        automated match to d1o60a_
        complexed with azi, gol
      2. 1343280Domain d3pg8b_: 3pg8 B: [214766]
        automated match to d1o60a_
        complexed with azi, gol
    3. Domains for 3pg9:
      1. 1343281Domain d3pg9a_: 3pg9 A: [183705]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      2. 1343282Domain d3pg9b_: 3pg9 B: [183706]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      3. 1343283Domain d3pg9c_: 3pg9 C: [183707]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      4. 1343284Domain d3pg9d_: 3pg9 D: [183708]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      5. 1343285Domain d3pg9e_: 3pg9 E: [183709]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      6. 1343286Domain d3pg9f_: 3pg9 F: [183710]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      7. 1343287Domain d3pg9g_: 3pg9 G: [183711]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
      8. 1343288Domain d3pg9h_: 3pg9 H: [183712]
        automated match to d1rzma_
        complexed with azi, cl, no3, tyr
  7. 1343289Vibrio cholerae [TaxId:686] [188599] (1 PDB entry)

More info for Protein automated matches from c.1.10.4: Class I DAHP synthetase

Timeline for Protein automated matches from c.1.10.4: Class I DAHP synthetase: