Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1631855Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
  3. 1650133Fold d.58: Ferredoxin-like [54861] (59 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 1650675Superfamily d.58.4: Dimeric alpha+beta barrel [54909] (24 families) (S)
    dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
  5. 1651040Family d.58.4.0: automated matches [191316] (1 protein)
    not a true family
  6. 1651041Protein automated matches [190081] (19 species)
    not a true protein

Species:

  1. 1651042Agrobacterium tumefaciens [TaxId:176299] [186802] (1 PDB entry)
  2. 1651050Auricularia auricula-judae [TaxId:29892] [193309] (1 PDB entry)
  3. 1651053Bacteroides fragilis [TaxId:272559] [232176] (1 PDB entry)
  4. 1651056Bordetella bronchiseptica [TaxId:257310] [225323] (1 PDB entry)
  5. 1651059Burkholderia cepacia [TaxId:292] [224930] (3 PDB entries)
    1. Domain for 4lbh:
    2. Domains for 4lbi:
      1. 1651062Domain d4lbia_: 4lbi A: [224637]
        automated match to d1mwqa_
      2. 1651063Domain d4lbib_: 4lbi B: [224638]
        automated match to d1mwqa_
      3. 1651064Domain d4lbic_: 4lbi C: [224639]
        automated match to d1mwqa_
      4. 1651065Domain d4lbid_: 4lbi D: [224640]
        automated match to d1mwqa_
    3. Domain for 4lbp:
  6. Colwellia psychrerythraea [TaxId:167879] [189235] (1 PDB entry)
  7. 1651093Escherichia coli [TaxId:511145] [189909] (1 PDB entry)
  8. 1651098Methanosarcina mazei [TaxId:192952] [226315] (1 PDB entry)
  9. 1651101Mycobacterium tuberculosis [TaxId:1773] [225795] (2 PDB entries)
    1. Domains for 3hx9:
      1. 1651102Domain d3hx9a_: 3hx9 A: [211396]
        automated match to d1iujb_
        complexed with cl, hem
      2. 1651103Domain d3hx9b_: 3hx9 B: [211397]
        automated match to d1iujb_
        complexed with cl, hem
    2. Domains for 4nl5:
      1. 1651104Domain d4nl5a_: 4nl5 A: [257171]
        automated match to d3hx9a_
        complexed with act, cyn, hem
      2. 1651105Domain d4nl5b_: 4nl5 B: [257991]
        automated match to d3hx9a_
        complexed with act, cyn, hem
  10. 1651106Neisseria meningitidis [TaxId:122586] [231120] (3 PDB entries)
    1. Domains for 2p5v:
      1. 1651107Domain d2p5va2: 2p5v A:66-158 [231123]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      2. 1651108Domain d2p5vb2: 2p5v B:66-158 [231121]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      3. 1651109Domain d2p5vc2: 2p5v C:66-158 [231125]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      4. 1651110Domain d2p5ve2: 2p5v E:66-158 [231131]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      5. 1651111Domain d2p5vf2: 2p5v F:66-158 [231133]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      6. 1651112Domain d2p5vg2: 2p5v G:66-158 [231128]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
      7. 1651113Domain d2p5vh2: 2p5v H:66-158 [231129]
        Other proteins in same PDB: d2p5va1, d2p5vb1, d2p5vc1, d2p5vd1, d2p5ve1, d2p5vf1, d2p5vg1, d2p5vh1
        automated match to d2cyya2
        complexed with ca, cl, gol
    2. Domains for 2p6s:
      1. 1651114Domain d2p6sa2: 2p6s A:66-158 [243417]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      2. 1651115Domain d2p6sb2: 2p6s B:66-158 [243419]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      3. 1651116Domain d2p6sc2: 2p6s C:66-158 [243421]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      4. 1651117Domain d2p6sd2: 2p6s D:66-158 [243423]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      5. 1651118Domain d2p6se2: 2p6s E:66-158 [243425]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      6. 1651119Domain d2p6sf2: 2p6s F:66-158 [243427]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
      7. 1651120Domain d2p6sg2: 2p6s G:66-158 [243429]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vg2
        complexed with ca, gol, met
      8. 1651121Domain d2p6sh2: 2p6s H:66-158 [243431]
        Other proteins in same PDB: d2p6sa1, d2p6sb1, d2p6sc1, d2p6sd1, d2p6se1, d2p6sf1, d2p6sg1, d2p6sh1
        automated match to d2p5vb2
        complexed with ca, gol, met
    3. Domains for 2p6t:
      1. 1651122Domain d2p6ta2: 2p6t A:66-158 [243433]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      2. 1651123Domain d2p6tb2: 2p6t B:66-159 [243435]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      3. 1651124Domain d2p6tc2: 2p6t C:66-158 [243437]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      4. 1651125Domain d2p6td2: 2p6t D:66-158 [243439]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      5. 1651126Domain d2p6te2: 2p6t E:66-158 [243441]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      6. 1651127Domain d2p6tf2: 2p6t F:66-158 [243443]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
      7. 1651128Domain d2p6tg2: 2p6t G:66-158 [243445]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vg2
        complexed with ca, gol, leu
      8. 1651129Domain d2p6th2: 2p6t H:66-158 [243447]
        Other proteins in same PDB: d2p6ta1, d2p6tb1, d2p6tc1, d2p6td1, d2p6te1, d2p6tf1, d2p6tg1, d2p6th1
        automated match to d2p5vb2
        complexed with ca, gol, leu
  11. 1651130Rhizobium leguminosarum [TaxId:386] [188716] (2 PDB entries)
    1. Domains for 2qlw:
      1. 1651131Domain d2qlwa_: 2qlw A: [243589]
        automated match to d2qlxa_
        complexed with fmt, mg
      2. 1651132Domain d2qlwb_: 2qlw B: [243590]
        automated match to d2qlxa_
        complexed with fmt, mg
    2. Domains for 2qlx:
      1. 1651133Domain d2qlxa_: 2qlx A: [167718]
        automated match to d1x8da1
        complexed with fmt, mg, rm4
      2. 1651134Domain d2qlxb_: 2qlx B: [167719]
        automated match to d1x8da1
        complexed with fmt, mg, rm4
  12. 1651135Rhodococcus jostii [TaxId:101510] [256041] (8 PDB entries)
    1. Domains for 3qnr:
      1. 1651140Domain d3qnra_: 3qnr A: [248942]
        automated match to d2gvka1
        complexed with fmt, gol, hem
      2. 1651141Domain d3qnrb_: 3qnr B: [248943]
        automated match to d2gvka1
        complexed with fmt, gol, hem
      3. 1651142Domain d3qnrc_: 3qnr C: [248944]
        automated match to d2gvka1
        complexed with fmt, gol, hem
    2. Domain for 3qns:
    3. Domains for 3vec:
      1. 1651155Domain d3veca_: 3vec A: [250522]
        automated match to d2gvka1
        complexed with cl, gol, hem
      2. 1651156Domain d3vecb_: 3vec B: [250523]
        automated match to d2gvka1
        complexed with cl, gol, hem
      3. 1651157Domain d3vecc_: 3vec C: [250524]
        automated match to d2gvka1
        complexed with cl, gol, hem
    4. Domains for 3ved:
      1. 1651152Domain d3veda_: 3ved A: [250525]
        automated match to d2gvka1
        complexed with cl, gol, hem
      2. 1651153Domain d3vedb_: 3ved B: [250526]
        automated match to d2gvka1
        complexed with cl, gol, hem
      3. 1651154Domain d3vedc_: 3ved C: [250527]
        automated match to d2gvka1
        complexed with cl, gol, hem
    5. Domains for 3vee:
      1. 1651146Domain d3veea_: 3vee A: [250528]
        automated match to d2gvka1
        complexed with cl, fmt, hem
      2. 1651147Domain d3veeb_: 3vee B: [250529]
        automated match to d2gvka1
        complexed with cl, fmt, hem
      3. 1651148Domain d3veec_: 3vee C: [250530]
        automated match to d2gvka1
        complexed with cl, fmt, hem
    6. Domains for 3vef:
      1. 1651149Domain d3vefa_: 3vef A: [250531]
        automated match to d2gvka1
        complexed with cl, hem
      2. 1651150Domain d3vefb_: 3vef B: [250532]
        automated match to d2gvka1
        complexed with cl, hem
      3. 1651151Domain d3vefc_: 3vef C: [250533]
        automated match to d2gvka1
        complexed with cl, hem
    7. Domains for 3veg:
      1. 1651143Domain d3vega_: 3veg A: [250534]
        automated match to d2gvka1
        complexed with cl, hem
      2. 1651144Domain d3vegb_: 3veg B: [250535]
        automated match to d2gvka1
        complexed with cl, hem
      3. 1651145Domain d3vegc_: 3veg C: [250536]
        automated match to d2gvka1
        complexed with cl, hem
    8. Domains for 4hov:
      1. 1651137Domain d4hova_: 4hov A: [252478]
        automated match to d2gvka1
        complexed with cl, fmt, gol, hem, mn
      2. 1651138Domain d4hovb_: 4hov B: [252479]
        automated match to d2gvka1
        complexed with cl, fmt, gol, hem, mn
      3. 1651139Domain d4hovc_: 4hov C: [252480]
        automated match to d2gvka1
        complexed with cl, fmt, gol, hem, mn
  13. 1651158Rhodococcus opacus [TaxId:37919] [196895] (4 PDB entries)
    1. Domains for 3znj:
      1. 1651169Domain d3znj1_: 3znj 1: [218324]
        automated match to d3znua_
        complexed with cl, edo
      2. 1651170Domain d3znj2_: 3znj 2: [218325]
        automated match to d3znua_
        complexed with cl, edo
      3. 1651171Domain d3znj3_: 3znj 3: [218326]
        automated match to d3znua_
        complexed with cl, edo
      4. 1651172Domain d3znj4_: 3znj 4: [218327]
        automated match to d3znua_
        complexed with cl, edo
      5. 1651173Domain d3znj5_: 3znj 5: [218328]
        automated match to d3znua_
        complexed with cl, edo
      6. 1651174Domain d3znj6_: 3znj 6: [218329]
        automated match to d3znua_
        complexed with cl, edo
      7. 1651175Domain d3znj7_: 3znj 7: [218330]
        automated match to d3znua_
        complexed with cl, edo
      8. 1651176Domain d3znj8_: 3znj 8: [218331]
        automated match to d3znua_
        complexed with cl, edo
      9. 1651177Domain d3znj9_: 3znj 9: [218332]
        automated match to d3znua_
        complexed with cl, edo
      10. 1651178Domain d3znja_: 3znj A: [218333]
        automated match to d3znua_
        complexed with cl, edo
      11. 1651179Domain d3znjb_: 3znj B: [218334]
        automated match to d3znua_
        complexed with cl, edo
      12. 1651180Domain d3znjc_: 3znj C: [218335]
        automated match to d3znua_
        complexed with cl, edo
      13. 1651181Domain d3znjd_: 3znj D: [218336]
        automated match to d3znua_
        complexed with cl, edo
      14. 1651182Domain d3znje_: 3znj E: [218337]
        automated match to d3znua_
        complexed with cl, edo
      15. 1651183Domain d3znjf_: 3znj F: [218338]
        automated match to d3znua_
        complexed with cl, edo
      16. 1651184Domain d3znjg_: 3znj G: [218339]
        automated match to d3znua_
        complexed with cl, edo
      17. 1651185Domain d3znjh_: 3znj H: [218340]
        automated match to d3znua_
        complexed with cl, edo
      18. 1651186Domain d3znji_: 3znj I: [218341]
        automated match to d3znua_
        complexed with cl, edo
      19. 1651187Domain d3znjj_: 3znj J: [218342]
        automated match to d3znua_
        complexed with cl, edo
      20. 1651188Domain d3znjk_: 3znj K: [218343]
        automated match to d3znua_
        complexed with cl, edo
      21. 1651189Domain d3znjl_: 3znj L: [218344]
        automated match to d3znua_
        complexed with cl, edo
      22. 1651190Domain d3znjm_: 3znj M: [218345]
        automated match to d3znua_
        complexed with cl, edo
      23. 1651191Domain d3znjn_: 3znj N: [218346]
        automated match to d3znua_
        complexed with cl, edo
      24. 1651192Domain d3znjo_: 3znj O: [218347]
        automated match to d3znua_
        complexed with cl, edo
      25. 1651193Domain d3znjp_: 3znj P: [218348]
        automated match to d3znua_
        complexed with cl, edo
      26. 1651194Domain d3znjr_: 3znj R: [218349]
        automated match to d3znua_
        complexed with cl, edo
      27. 1651195Domain d3znjs_: 3znj S: [218350]
        automated match to d3znua_
        complexed with cl, edo
      28. 1651196Domain d3znjt_: 3znj T: [218351]
        automated match to d3znua_
        complexed with cl, edo
      29. 1651197Domain d3znju_: 3znj U: [218352]
        automated match to d3znua_
        complexed with cl, edo
      30. 1651198Domain d3znjv_: 3znj V: [218353]
        automated match to d3znua_
        complexed with cl, edo
      31. 1651199Domain d3znjw_: 3znj W: [218354]
        automated match to d3znua_
        complexed with cl, edo
      32. 1651200Domain d3znjx_: 3znj X: [218355]
        automated match to d3znua_
        complexed with cl, edo
      33. 1651201Domain d3znjy_: 3znj Y: [218356]
        automated match to d3znua_
        complexed with cl, edo
      34. 1651202Domain d3znjz_: 3znj Z: [218357]
        automated match to d3znua_
        complexed with cl, edo
    2. Domains for 3znu:
      1. 1651159Domain d3znua_: 3znu A: [196931]
        automated match to d1mlia_
        complexed with cl, edo, mg
      2. 1651160Domain d3znub_: 3znu B: [201345]
        automated match to d3znua_
        complexed with cl, edo, mg
      3. 1651161Domain d3znuc_: 3znu C: [201346]
        automated match to d3znua_
        complexed with cl, edo, mg
      4. 1651162Domain d3znud_: 3znu D: [201347]
        automated match to d3znua_
        complexed with cl, edo, mg
      5. 1651163Domain d3znue_: 3znu E: [201348]
        automated match to d3znua_
        complexed with cl, edo, mg
      6. 1651164Domain d3znuf_: 3znu F: [201349]
        automated match to d3znua_
        complexed with cl, edo, mg
      7. 1651165Domain d3znug_: 3znu G: [201350]
        automated match to d3znua_
        complexed with cl, edo, mg
      8. 1651166Domain d3znuh_: 3znu H: [201351]
        automated match to d3znua_
        complexed with cl, edo, mg
      9. 1651167Domain d3znui_: 3znu I: [201352]
        automated match to d3znua_
        complexed with cl, edo, mg
      10. 1651168Domain d3znuj_: 3znu J: [201353]
        automated match to d3znua_
        complexed with cl, edo, mg
    3. Domains for 3zo7:
      1. 1651203Domain d3zo7a_: 3zo7 A: [196934]
        automated match to d1mlia_
        complexed with cl, k6h
      2. 1651204Domain d3zo7b_: 3zo7 B: [201356]
        automated match to d3zo7a_
        complexed with cl, k6h
      3. 1651205Domain d3zo7c_: 3zo7 C: [201357]
        automated match to d3zo7a_
        complexed with cl, k6h
      4. 1651206Domain d3zo7d_: 3zo7 D: [201358]
        automated match to d3zo7a_
        complexed with cl, k6h
      5. 1651207Domain d3zo7e_: 3zo7 E: [201359]
        automated match to d3zo7a_
        complexed with cl, k6h
      6. 1651208Domain d3zo7f_: 3zo7 F: [201360]
        automated match to d3zo7a_
        complexed with cl, k6h
      7. 1651209Domain d3zo7g_: 3zo7 G: [201361]
        automated match to d3zo7a_
        complexed with cl, k6h
      8. 1651210Domain d3zo7h_: 3zo7 H: [201362]
        automated match to d3zo7a_
        complexed with cl, k6h
      9. 1651211Domain d3zo7i_: 3zo7 I: [201363]
        automated match to d3zo7a_
        complexed with cl, k6h
      10. 1651212Domain d3zo7j_: 3zo7 J: [201364]
        automated match to d3zo7a_
        complexed with cl, k6h
    4. Domains for 4fpi:
      1. 1651213Domain d4fpia_: 4fpi A: [202095]
        automated match to d4fpie_
      2. 1651214Domain d4fpib_: 4fpi B: [202096]
        automated match to d4fpie_
      3. 1651215Domain d4fpic_: 4fpi C: [196896]
        automated match to d1mlia_
      4. 1651216Domain d4fpid_: 4fpi D: [202097]
        automated match to d4fpie_
      5. 1651217Domain d4fpie_: 4fpi E: [196897]
        automated match to d1mlia_
      6. 1651218Domain d4fpif_: 4fpi F: [202098]
        automated match to d4fpie_
      7. 1651219Domain d4fpig_: 4fpi G: [202099]
        automated match to d4fpie_
      8. 1651220Domain d4fpih_: 4fpi H: [202100]
        automated match to d4fpie_
      9. 1651221Domain d4fpii_: 4fpi I: [202101]
        automated match to d4fpie_
      10. 1651222Domain d4fpij_: 4fpi J: [202102]
        automated match to d4fpie_
      11. 1651223Domain d4fpik_: 4fpi K: [202103]
        automated match to d4fpie_
      12. 1651224Domain d4fpil_: 4fpi L: [202104]
        automated match to d4fpie_
      13. 1651225Domain d4fpim_: 4fpi M: [202105]
        automated match to d4fpie_
      14. 1651226Domain d4fpin_: 4fpi N: [202106]
        automated match to d4fpie_
      15. 1651227Domain d4fpio_: 4fpi O: [202107]
        automated match to d4fpie_
      16. 1651228Domain d4fpip_: 4fpi P: [202108]
        automated match to d4fpie_
      17. 1651229Domain d4fpir_: 4fpi R: [202109]
        automated match to d4fpie_
      18. 1651230Domain d4fpis_: 4fpi S: [202110]
        automated match to d4fpie_
      19. 1651231Domain d4fpit_: 4fpi T: [202111]
        automated match to d4fpie_
      20. 1651232Domain d4fpiu_: 4fpi U: [202112]
        automated match to d4fpie_
  14. 1651233Shewanella oneidensis [TaxId:211586] [230523] (1 PDB entry)
  15. 1651235Streptomyces coelicolor [TaxId:100226] [256276] (1 PDB entry)
  16. 1651240Sulfolobus tokodaii [TaxId:111955] [230708] (2 PDB entries)
    1. Domain for 2e7x:
    2. Domain for 2efp:
  17. 1651243Sulfolobus tokodaii [TaxId:273063] [230709] (7 PDB entries)
    1. Domain for 2efn:
    2. Domain for 2efo:
    3. Domain for 2efq:
    4. Domain for 2pmh:
    5. Domain for 2pn6:
    6. Domain for 2yx4:
    7. Domain for 2yx7:
  18. 1651251Thermobifida fusca [TaxId:269800] [225385] (1 PDB entry)
  19. 1651254Yersinia pestis [TaxId:632] [187749] (1 PDB entry)

More info for Protein automated matches from d.58.4.0: automated matches

Timeline for Protein automated matches from d.58.4.0: automated matches: