Species:

1. Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [189358] (1 PDB entry)

   • Domain for 3hmc:

     • Domain d3hmca_: 3hmc A: [177695] automated match to d1jfxa_ complexed with mes

2. Aplysia kurodai [TaxId:6501] [194466] (1 PDB entry)

   • Domains for 3vup:

     1. Domain d3vupa_: 3vup A: [194468] automated match to d2c0ha1 complexed with so4, trs

     2. Domain d3vupb_: 3vup B: [194467] automated match to d2c0ha1 complexed with so4, trs

3. Aspergillus fumigatus [TaxId:330879] [189460] (1 PDB entry)

   • Domains for 2x8r:

     1. Domain d2x8ra_: 2x8r A: [169947] automated match to d1jfxa_ complexed with cl

     2. Domain d2x8rb_: 2x8r B: [169948] automated match to d1jfxa_ complexed with cl

     3. Domain d2x8rc_: 2x8r C: [169949] automated match to d1jfxa_ complexed with cl

     4. Domain d2x8rd_: 2x8r D: [169950] automated match to d1jfxa_ complexed with cl

     5. Domain d2x8re_: 2x8r E: [169951] automated match to d1jfxa_ complexed with cl

     6. Domain d2x8rf_: 2x8r F: [169952] automated match to d1jfxa_ complexed with cl

4. Aspergillus fumigatus [TaxId:451804] [189778] (2 PDB entries)

   1. Domains for 2xtk:

      1. Domain d2xtka_: 2xtk A: [170379] automated match to d1hvqa_ complexed with azm, po4

      2. Domain d2xtkb_: 2xtk B: [170380] automated match to d1hvqa_ complexed with azm, po4

   2. Domains for 2xvp:

      1. Domain d2xvpa_: 2xvp A: [170428] automated match to d1hvqa_ complexed with po4

      2. Domain d2xvpb_: 2xvp B: [170429] automated match to d1hvqa_ complexed with po4

5. Aspergillus fumigatus [TaxId:5085] [189545] (2 PDB entries)

   1. Domains for 2xuc:

      1. Domain d2xuca_: 2xuc A: [170383] automated match to d1hvqa_ complexed with cl, po4, xrg

      2. Domain d2xucb_: 2xuc B: [170384] automated match to d1hvqa_ complexed with cl, po4, xrg

      3. Domain d2xucc_: 2xuc C: [170385] automated match to d1hvqa_ complexed with cl, po4, xrg

   2. Domains for 2xvn:

      1. Domain d2xvna_: 2xvn A: [170425] automated match to d1hvqa_ complexed with cl, kls

      2. Domain d2xvnb_: 2xvn B: [170426] automated match to d1hvqa_ complexed with cl, kls

      3. Domain d2xvnc_: 2xvn C: [170427] automated match to d1hvqa_ complexed with cl, kls

6. Bacillus anthracis [TaxId:198094] [188951] (1 PDB entry)

   • Domain for 2wag:

     • Domain d2waga_: 2wag A: [169160] automated match to d1jfxa_ complexed with 15p, gol, mg, so4

7. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188036] (4 PDB entries)

   1. Domain for 2uy2:

      • Domain d2uy2a_: 2uy2 A: [168220] automated match to d1hvqa_ complexed with gol

   2. Domain for 2uy3:

      • Domain d2uy3a_: 2uy3 A: [168221] automated match to d1hvqa_ complexed with h33

   3. Domain for 2uy4:

      • Domain d2uy4a_: 2uy4 A: [168222] automated match to d1hvqa_ complexed with azm

   4. Domain for 2uy5:

      • Domain d2uy5a_: 2uy5 A: [168223] automated match to d1hvqa_ complexed with h35

8. Clostridium stercorarium [TaxId:1510] [187615] (1 PDB entry)

   • Domains for 2dep:

     1. Domain d2depa_: 2dep A: [163617] automated match to d1hiza_

     2. Domain d2depb_: 2dep B: [163618] automated match to d1hiza_

9. Escherichia coli [TaxId:83333] [193700] (1 PDB entry)

   • Domain for 2xhy:

     • Domain d2xhyb_: 2xhy B: [193701] automated match to d3qoma_ complexed with br, so4

10. Fusarium oxysporum [TaxId:5507] [194927] (1 PDB entry)
    • Domains for 3u7b:

      1. Domain d3u7ba_: 3u7b A: [194930] automated match to d1v6ya_ complexed with edo

      2. Domain d3u7bc_: 3u7b C: [194929] automated match to d1v6ya_ complexed with edo

      3. Domain d3u7bd_: 3u7b D: [194932] automated match to d1v6ya_ complexed with edo

      4. Domain d3u7be_: 3u7b E: [194931] automated match to d1v6ya_ complexed with edo

11. Lactobacillus plantarum [TaxId:1590] [189663] (1 PDB entry)

    • Domain for 3qom:

      • Domain d3qoma_: 3qom A: [184549] automated match to d1bgaa_ complexed with act, bgc, po4

12. Lactobacillus plantarum [TaxId:220668] [193494] (1 PDB entry)

    • Domain for 4gze:

      • Domain d4gzea_: 4gze A: [193495] automated match to d3qoma_ complexed with cl, gol

13. Neotermes koshunensis [TaxId:60586] [189411] (6 PDB entries)

    1. Domain for 3ahz:

       • Domain d3ahza_: 3ahz A: [172187] automated match to d1wcga1 complexed with gol, trs

    2. Domain for 3ai0:

       • Domain d3ai0a_: 3ai0 A: [172188] automated match to d1wcga1 complexed with gol, pnw

    3. Domain for 3vii:

       • Domain d3viia_: 3vii A: [194990] automated match to d3ahza_ complexed with btb, gol, na

    4. Domain for 3vij:

       • Domain d3vija_: 3vij A: [194993] automated match to d3ahza_ complexed with bgc, cl, gol, na

    5. Domain for 3vil:

       • Domain d3vila_: 3vil A: [194992] automated match to d3ahza_ complexed with cl, edo, na, sa0, sa9

    6. Domain for 3vim:

       • Domain d3vima_: 3vim A: [194991] automated match to d3ahza_ complexed with cl, gbh, gol, na

14. Paenibacillus polymyxa [TaxId:1406] [187337] (5 PDB entries)

    1. Domain for 2jie:

       • Domain d2jiea_: 2jie A: [166208] automated match to d1uyqa1 complexed with g2f

    2. Domain for 2o9p:

       • Domain d2o9pa_: 2o9p A: [166594] automated match to d1uyqa1

    3. Domain for 2o9r:

       • Domain d2o9ra_: 2o9r A: [166595] automated match to d1uyqa1 complexed with tcb

    4. Domain for 2o9t:

       • Domain d2o9ta_: 2o9t A: [166597] automated match to d1uyqa1 complexed with bgc

    5. Domain for 2z1s:

       • Domain d2z1sa_: 2z1s A: [170985] automated match to d1uyqa1 complexed with ctt

15. Paenibacillus sp. [TaxId:324057] [193799] (1 PDB entry)

    • Domain for 3rdk:

      • Domain d3rdkb_: 3rdk B: [193800] automated match to d2uwfa_ complexed with cl, gol, mg

16. Penicillium canescens [TaxId:5083] [195263] (1 PDB entry)

    • Domain for 4f8x:

      • Domain d4f8xa_: 4f8x A: [195264] automated match to d1xyza_ complexed with nag

17. Rauvolfia serpentina [TaxId:4060] [189830] (6 PDB entries)

    1. Domains for 3u57:

       1. Domain d3u57a_: 3u57 A: [186080] automated match to d1cbga_ complexed with cl, dh8

       2. Domain d3u57b_: 3u57 B: [186081] automated match to d1cbga_ complexed with cl, dh8

    2. Domains for 3u5u:

       1. Domain d3u5ua_: 3u5u A: [186088] automated match to d1cbga_ complexed with cl

       2. Domain d3u5ub_: 3u5u B: [186089] automated match to d1cbga_ complexed with cl

    3. Domains for 3u5y:

       1. Domain d3u5ya_: 3u5y A: [186091] automated match to d1cbga_ complexed with cl, scg

       2. Domain d3u5yb_: 3u5y B: [186092] automated match to d1cbga_ complexed with cl, scg

    4. Domain for 4atd:

       • Domain d4atda_: 4atd A: [197361] automated match to d3u57a_ complexed with so4

    5. Domain for 4atl:

       • Domain d4atlb_: 4atl B: [193272] automated match to d3u57a_ complexed with bgc

    6. Domains for 4ek7:

       1. Domain d4ek7a_: 4ek7 A: [193987] automated match to d3u57a_ complexed with bgc, cl

       2. Domain d4ek7b_: 4ek7 B: [193988] automated match to d3u57a_ complexed with bgc, cl

18. Salmonella enterica [TaxId:99287] [194211] (3 PDB entries)

    1. Domain for 4gvh:

       • Domain d4gvhb_: 4gvh B: [194212] automated match to d2oxna_ complexed with 0xy, mes

    2. Domains for 4gvi:

       1. Domain d4gvia_: 4gvi A: [194216] automated match to d2oxna_ complexed with ah0, mes, nag; mutant

       2. Domain d4gvib_: 4gvi B: [194215] automated match to d2oxna_ complexed with ah0, mes, nag; mutant

    3. Domains for 4hzm:

       1. Domain d4hzma_: 4hzm A: [197392] automated match to d2oxna_ complexed with 1bw, mes

       2. Domain d4hzmb_: 4hzm B: [197393] automated match to d2oxna_ complexed with 1bw, mes

19. Scadoxus multiflorus [TaxId:82246] [188826] (6 PDB entries)

    1. Domain for 3d5h:

       • Domain d3d5ha_: 3d5h A: [173693] automated match to d1hvqa_ complexed with act, po4

    2. Domain for 3hu7:

       • Domain d3hu7a_: 3hu7 A: [177839] automated match to d1hvqa_ complexed with act, po4

    3. Domain for 3m7s:

       • Domain d3m7sa_: 3m7s A: [180914] automated match to d1hvqa_ complexed with act, cbi, po4

    4. Domain for 3mu7:

       • Domain d3mu7a_: 3mu7 A: [181559] automated match to d1hvqa_ complexed with peg, po4

    5. Domain for 3o9n:

       • Domain d3o9na_: 3o9n A: [182898] automated match to d1hvqa_ complexed with act, po4

    6. Domain for 3oih:

       • Domain d3oiha_: 3oih A: [183053] automated match to d1hvqa_ complexed with act, po4, tre

20. Solanum tuberosum [TaxId:4113] [193294] (3 PDB entries)

    1. Domains for 3ur8:

       1. Domain d3ur8a_: 3ur8 A: [195247] automated match to d3em5a_

       2. Domain d3ur8b_: 3ur8 B: [195248] automated match to d3em5a_

    2. Domain for 4gzi:

       • Domain d4gzia_: 4gzi A: [193296] automated match to d3em5a_ mutant

    3. Domain for 4gzj:

       • Domain d4gzja_: 4gzj A: [193295] automated match to d3em5a_ mutant

21. Streptococcus mutans [TaxId:1309] [195139] (1 PDB entry)

    • Domains for 4f66:

      1. Domain d4f66a_: 4f66 A: [195141] automated match to d3qoma_ complexed with bg6, edo, fmt

      2. Domain d4f66b_: 4f66 B: [195140] automated match to d3qoma_ complexed with bg6, edo, fmt

22. Streptococcus mutans [TaxId:210007] [194595] (1 PDB entry)

    • Domain for 4gpn:

      • Domain d4gpnb_: 4gpn B: [194596] automated match to d3qoma_ complexed with 6gb, gol, trs; mutant

23. Streptococcus pneumoniae [TaxId:170187] [196905] (1 PDB entry)

    • Domain for 4ipn:

      • Domain d4ipnb_: 4ipn B: [196906] automated match to d3qoma_ complexed with 1ft

24. Tamarindus indica [TaxId:58860] [197290] (2 PDB entries)

    1. Domain for 4b15:

       • Domain d4b15a_: 4b15 A: [197292] automated match to d1kqza_ complexed with act, mpd, na

    2. Domain for 4b16:

       • Domain d4b16a_: 4b16 A: [197291] automated match to d1kqza_ complexed with act, gol, mpd, na, nag

25. Thermoanaerobacterium saccharolyticum [TaxId:1094508] [196751] (5 PDB entries)

    1. Domain for 3w24:

       • Domain d3w24a_: 3w24 A: [196752] automated match to d2depa_

    2. Domain for 3w25:

       • Domain d3w25a_: 3w25 A: [196756] automated match to d2depa_ mutant

    3. Domain for 3w26:

       • Domain d3w26a_: 3w26 A: [196755] automated match to d2depa_ mutant

    4. Domain for 3w28:

       • Domain d3w28a_: 3w28 A: [196753] automated match to d3ms8a_ mutant

    5. Domain for 3w29:

       • Domain d3w29a_: 3w29 A: [196754] automated match to d3ms8a_ mutant

26. Thermobifida fusca [TaxId:2021] [187554] (2 PDB entries)

    1. Domains for 2ckr:

       1. Domain d2ckra_: 2ckr A: [163431] automated match to d1lf1a_ complexed with ben, na, pg4, zn

       2. Domain d2ckrb_: 2ckr B: [163432] automated match to d1lf1a_ complexed with ben, na, pg4, zn

    2. Domains for 2cks:

       1. Domain d2cksa_: 2cks A: [163433] automated match to d1lf1a_ complexed with ben, na, zn

       2. Domain d2cksb_: 2cks B: [163434] automated match to d1lf1a_ complexed with ben, na, zn

27. Thermotoga maritima [TaxId:2336] [186796] (2 PDB entries)

    1. Domain for 1vbr:

       • Domain d1vbrb_: 1vbr B: [119962] Other proteins in same PDB: d1vbra1 automated match to d1xyza_ complexed with acy

    2. Domains for 1vbu:

       1. Domain d1vbua_: 1vbu A: [119963] automated match to d1xyza_ complexed with acy, gol, so4

       2. Domain d1vbub_: 1vbu B: [119964] automated match to d1xyza_ complexed with acy, gol, so4

28. Uncultured bacterium [TaxId:77133] [188624] (1 PDB entry)

    • Domain for 3cmj:

      • Domain d3cmja_: 3cmj A: [173332] automated match to d1od0b_ complexed with na, srt

29. Unidentified phage [TaxId:38018] [193872] (1 PDB entry)

    • Domain for 2nw0:

      • Domain d2nw0b_: 2nw0 B: [193873] automated match to d3hmca_ complexed with act

30. Vespula vulgaris [TaxId:7454] [187426] (1 PDB entry)

    • Domain for 2atm:

      • Domain d2atma_: 2atm A: [162896] automated match to d1fcua_ complexed with mes, so4

More info for Protein automated matches from c.1.8.0: automated matches

Timeline for Protein automated matches from c.1.8.0: automated matches:

• Protein automated matches from c.1.8.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.1.8.0: automated matches appears in SCOPe 2.03
  
• Protein automated matches from c.1.8.0: automated matches appears in the current release, SCOPe 2.08