SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2128255Fold c.61: PRTase-like [53270] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
  4. 2128256Superfamily c.61.1: PRTase-like [53271] (3 families) (S)
  5. 2128257Family c.61.1.1: Phosphoribosyltransferases (PRTases) [53272] (16 protein domains)
  6. 2128615Protein automated matches [190074] (13 species)
    not a true protein

Species:

  1. 2128616Bacillus subtilis [TaxId:1423] [261868] (1 PDB entry)
  2. 2128621Bacillus subtilis [TaxId:224308] [261871] (1 PDB entry)
  3. 2128623Burkholderia pseudomallei [TaxId:28450] [188498] (1 PDB entry)
  4. 2128628Human (Homo sapiens) [TaxId:9606] [187905] (1 PDB entry)
  5. 2128631Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188472] (1 PDB entry)
  6. 2128634Thermoanaerobacter tengcongensis [TaxId:119072] [187747] (1 PDB entry)
  7. 2128636Thermus thermophilus HB8 [TaxId:300852] [186795] (1 PDB entry)
  8. 2128640Thermus thermophilus [TaxId:274] [188051] (1 PDB entry)
  9. 2128645Vibrio cholerae [TaxId:666] [189453] (1 PDB entry)
  10. 2270766Trypanosoma cruzi [TaxId:353153] [314071] (1 PDB entry)
  11. 2271747Mycobacterium tuberculosis [TaxId:419947] [315048] (1 PDB entry)
  12. 2285183Plasmodium vivax [TaxId:5855] [328484] (1 PDB entry)
  13. 2293499Escherichia coli [TaxId:562] [336800] (6 PDB entries)
    1. Domains for 5knr:
      1. 2293540Domain d5knrb_: 5knr B: [336841]
        automated match to d1g9sa_
        complexed with 3l5, mg
      2. 2293607Domain d5knra_: 5knr A: [336908]
        automated match to d1g9sa_
        complexed with 3l5, mg
    2. Domains for 5kns:
      1. 2293508Domain d5knsb_: 5kns B: [336809]
        automated match to d1g9sa_
        complexed with 3l7, epe, mg
      2. 2293611Domain d5knsa_: 5kns A: [336912]
        automated match to d1g9sa_
        complexed with 3l7, epe, mg
    3. Domains for 5knt:
      1. 2293500Domain d5kntb_: 5knt B: [336801]
        automated match to d1g9sa_
        complexed with 6wb, epe, mg
      2. 2293565Domain d5knta_: 5knt A: [336866]
        automated match to d1g9sa_
        complexed with 6wb, epe, mg
    4. Domains for 5knu:
      1. 2293506Domain d5knub_: 5knu B: [336807]
        automated match to d1g9sa_
        complexed with 6wa, epe, mg
      2. 2293612Domain d5knua_: 5knu A: [336913]
        automated match to d1g9sa_
        complexed with 6wa, epe, mg
    5. Domains for 5knv:
      1. 2293507Domain d5knva_: 5knv A: [336808]
        automated match to d1g9sa_
        complexed with 6w9, mg
      2. 2293511Domain d5knvb_: 5knv B: [336812]
        automated match to d1g9sa_
        complexed with 6w9, mg
    6. Domains for 5knx:
      1. 2293533Domain d5knxa_: 5knx A: [336834]
        automated match to d1g9sa_
        complexed with 6wc, mg
      2. 2293534Domain d5knxb_: 5knx B: [336835]
        automated match to d1g9sa_
        complexed with 6wc, mg

More info for Protein automated matches from c.61.1.1: Phosphoribosyltransferases (PRTases)

Timeline for Protein automated matches from c.61.1.1: Phosphoribosyltransferases (PRTases):