SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 2006336Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
    multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix
  4. 2006337Superfamily a.118.1: ARM repeat [48371] (26 families) (S)
  5. 2006338Family a.118.1.1: Armadillo repeat [48372] (7 protein domains)
  6. 2006450Protein automated matches [190070] (4 species)
    not a true protein

Species:

  1. 2006451Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187009] (3 PDB entries)
    1. Domains for 2c1t:
      1. 2006455Domain d2c1ta_: 2c1t A: [129642]
        automated match to d1un0a_
      2. 2006456Domain d2c1tb_: 2c1t B: [129643]
        automated match to d1un0a_
    2. Domains for 3ea5:
      1. 2006452Domain d3ea5b_: 3ea5 B: [158074]
        Other proteins in same PDB: d3ea5a_, d3ea5c_
        automated match to d2bkub1
        complexed with gdp, mg
      2. 2006453Domain d3ea5d_: 3ea5 D: [158075]
        Other proteins in same PDB: d3ea5a_, d3ea5c_
        automated match to d2bkub1
        complexed with gdp, mg
    3. Domain for 3nd2:
  2. 2006457Human (Homo sapiens) [TaxId:9606] [187211] (11 PDB entries)
    1. Domains for 2h4m:
      1. 2006469Domain d2h4ma_: 2h4m A: [242001]
        automated match to d1qbkb_
      2. 2006470Domain d2h4mb_: 2h4m B: [242002]
        automated match to d1qbkb_
    2. Domains for 2qmr:
      1. 2006471Domain d2qmra_: 2qmr A: [243591]
        automated match to d1qbkb_
      2. 2006472Domain d2qmrb_: 2qmr B: [243592]
        automated match to d1qbkb_
      3. 2006473Domain d2qmrc_: 2qmr C: [243593]
        automated match to d1qbkb_
      4. 2006474Domain d2qmrd_: 2qmr D: [243594]
        automated match to d1qbkb_
    3. Domain for 2z5k:
    4. Domain for 2z6h:
    5. Domains for 3ifq:
      1. 2006461Domain d3ifqa_: 3ifq A: [211662]
        automated match to d1i7xa_
        complexed with so4
      2. 2006462Domain d3ifqb_: 3ifq B: [211663]
        automated match to d1i7xa_
        complexed with so4
    6. Domain for 3tx7:
    7. Domains for 3wpt:
      1. 2006465Domain d3wpta_: 3wpt A: [268048]
        automated match to d3knda_
        complexed with peg
      2. 2006466Domain d3wptb_: 3wpt B: [268047]
        automated match to d3knda_
        complexed with peg
    8. Domain for 4djs:
    9. Domains for 4e4v:
      1. 2006459Domain d4e4va1: 4e4v A:70-497 [251663]
        Other proteins in same PDB: d4e4va2, d4e4vb2
        automated match to d1q1sc_
        complexed with dtt, gol
      2. 2006460Domain d4e4vb1: 4e4v B:70-497 [251664]
        Other proteins in same PDB: d4e4va2, d4e4vb2
        automated match to d1q1sc_
        complexed with dtt, gol
    10. Domain for 4fq3:
    11. Domain for 5tqc:
  3. 2006475Mouse (Mus musculus) [TaxId:10090] [186790] (4 PDB entries)
    1. Domain for 1v18:
    2. Domain for 2c1m:
    3. Domain for 3btr:
    4. Domain for 3zin:
  4. 2283825Saccharomyces cerevisiae [TaxId:559292] [327126] (2 PDB entries)
    1. Domains for 5h2w:
      1. 2283826Domain d5h2wa_: 5h2w A: [327127]
        automated match to d2c1ta_
      2. 2283844Domain d5h2wc_: 5h2w C: [327145]
        automated match to d2c1ta_
    2. Domain for 5h2x:

More info for Protein automated matches from a.118.1.1: Armadillo repeat

Timeline for Protein automated matches from a.118.1.1: Armadillo repeat: