Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 914068Fold a.39: EF Hand-like [47472] (4 superfamilies)
    core: 4 helices; array of 2 hairpins, opened
  4. 914069Superfamily a.39.1: EF-hand [47473] (12 families) (S)
    Duplication: consists of two EF-hand units: each is made of two helices connected with calcium-binding loop
  5. 914403Family a.39.1.5: Calmodulin-like [47502] (24 proteins)
    Duplication: made with two pairs of EF-hands
  6. 914871Protein automated matches [190064] (9 species)
    not a true protein

Species:

  1. 914872Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188855] (2 PDB entries)
    1. Domain for 3fwb:
    2. Domains for 3fwc:
      1. 914874Domain d3fwca_: 3fwc A: [176101]
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      2. 914875Domain d3fwce_: 3fwc E: [176102]
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      3. 914876Domain d3fwci_: 3fwc I: [176103]
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
      4. 914877Domain d3fwcm_: 3fwc M: [176104]
        automated match to d2ggma1
        protein/RNA complex; complexed with so4
  2. 914878Bay scallop (Argopecten irradians) [TaxId:31199] [189156] (2 PDB entries)
    1. Domain for 3jtd:
    2. Domain for 3jvt:
  3. 914881Chicken (Gallus gallus) [TaxId:9031] [187205] (1 PDB entry)
  4. 914883Human (Homo sapiens) [TaxId:9606] [186813] (6 PDB entries)
    1. Domain for 1w7j:
    2. Domains for 1y1a:
      1. 914888Domain d1y1aa_: 1y1a A: [122537]
        automated match to d1dgua_
        complexed with ca, gsh
      2. 914889Domain d1y1ab_: 1y1a B: [122538]
        automated match to d1dgua_
        complexed with ca, gsh
    3. Domain for 1y6w:
    4. Domain for 2d8n:
    5. Domain for 3ewt:
    6. Domain for 3ewv:
  5. 914891Jellyfish (Aequorea victoria) [TaxId:6100] [186782] (4 PDB entries)
    1. Domains for 1uhh:
      1. 914894Domain d1uhha_: 1uhh A: [119675]
        automated match to d1ej3a_
        complexed with czp
      2. 914895Domain d1uhhb_: 1uhh B: [119676]
        automated match to d1ej3a_
        complexed with czp
    2. Domains for 1uhi:
      1. 914898Domain d1uhia_: 1uhi A: [119677]
        automated match to d1ej3a_
        complexed with czi
      2. 914899Domain d1uhib_: 1uhi B: [119678]
        automated match to d1ej3a_
        complexed with czi
    3. Domains for 1uhj:
      1. 914896Domain d1uhja_: 1uhj A: [119679]
        automated match to d1ej3a_
        complexed with czb
      2. 914897Domain d1uhjb_: 1uhj B: [119680]
        automated match to d1ej3a_
        complexed with czb
    4. Domains for 1uhk:
      1. 914892Domain d1uhka_: 1uhk A: [119681]
        automated match to d1ej3a_
        complexed with czn
      2. 914893Domain d1uhkb_: 1uhk B: [119682]
        automated match to d1ej3a_
        complexed with czn
  6. 914900Mouse (Mus musculus) [TaxId:10090] [187204] (1 PDB entry)
  7. 914903Placopecten magellanicus [TaxId:6577] [189594] (3 PDB entries)
    1. Domains for 3pn7:
      1. 914904Domain d3pn7b_: 3pn7 B: [183858]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 914905Domain d3pn7c_: 3pn7 C: [183859]
        automated match to d1qviz_
        complexed with ca, mg
      3. 914906Domain d3pn7e_: 3pn7 E: [183860]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 914907Domain d3pn7f_: 3pn7 F: [183861]
        automated match to d1qviz_
        complexed with ca, mg
    2. Domains for 3ts5:
      1. 914908Domain d3ts5b_: 3ts5 B: [185926]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 914909Domain d3ts5c_: 3ts5 C: [185927]
        automated match to d1qviz_
        complexed with ca, mg
      3. 914910Domain d3ts5e_: 3ts5 E: [185928]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 914911Domain d3ts5f_: 3ts5 F: [185929]
        automated match to d1qviz_
        complexed with ca, mg
    3. Domains for 3tuy:
      1. 914912Domain d3tuyb_: 3tuy B: [185960]
        automated match to d1kk7y_
        complexed with ca, mg
      2. 914913Domain d3tuyc_: 3tuy C: [185961]
        automated match to d1qviz_
        complexed with ca, mg
      3. 914914Domain d3tuye_: 3tuy E: [185962]
        automated match to d1kk7y_
        complexed with ca, mg
      4. 914915Domain d3tuyf_: 3tuy F: [185963]
        automated match to d1qviz_
        complexed with ca, mg
  8. 914916Scherffelia dubia [TaxId:3190] [189616] (1 PDB entry)
  9. 914918Todarodes pacificus [TaxId:6637] [189006] (1 PDB entry)

More info for Protein automated matches from a.39.1.5: Calmodulin-like

Timeline for Protein automated matches from a.39.1.5: Calmodulin-like: