SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.5: RNase A-like [54075] (1 superfamily)
contains long curved beta-sheet and 3 helices
Superfamily d.5.1: RNase A-like [54076] (2 families)
can be classified as disulfide-rich
Family d.5.1.1: Ribonuclease A-like [54077] (9 proteins)
Protein automated matches [190061] (6 species)
not a true protein

Species:

Bullfrog (Rana catesbeiana) [TaxId:8400] [255002] (1 PDB entry)
- Domain for 1z5f:
  - Domain d1z5fa_: 1z5f A: [241109]
    automated match to d1oj1a_
Cow (Bos taurus) [TaxId:9913] [186780] (70 PDB entries)
1. Domains for 1u1b:
  1. Domain d1u1ba_: 1u1b A: [119419]
    automated match to d1a2wa_
    complexed with pax
  2. Domain d1u1bb_: 1u1b B: [119420]
    automated match to d1a2wa_
    complexed with pax
2. Domains for 1w4o:
  1. Domain d1w4oa_: 1w4o A: [120633]
    automated match to d1a2wa_
    complexed with ua3
  2. Domain d1w4ob_: 1w4o B: [120634]
    automated match to d1a2wa_
    complexed with ua3
3. Domains for 1w4p:
  1. Domain d1w4pa_: 1w4p A: [120635]
    automated match to d1a2wa_
    complexed with um3
  2. Domain d1w4pb_: 1w4p B: [120636]
    automated match to d1a2wa_
    complexed with um3
4. Domains for 1w4q:
  1. Domain d1w4qa_: 1w4q A: [120637]
    automated match to d1a2wa_
    complexed with umf
  2. Domain d1w4qb_: 1w4q B: [120638]
    automated match to d1a2wa_
    complexed with umf
5. Domains for 1wbu:
  1. Domain d1wbua_: 1wbu A: [120862]
    automated match to d1a2wa_
    complexed with wbu
  2. Domain d1wbub_: 1wbu B: [120863]
    automated match to d1a2wa_
    complexed with wbu
6. Domains for 1z6d:
  1. Domain d1z6da_: 1z6d A: [124516]
    automated match to d1a2wa_
    complexed with imp
  2. Domain d1z6db_: 1z6d B: [124517]
    automated match to d1a2wa_
    complexed with imp
7. Domains for 1z6s:
  1. Domain d1z6sa_: 1z6s A: [124569]
    automated match to d1a2wa_
    complexed with amp
  2. Domain d1z6sb_: 1z6s B: [124570]
    automated match to d1a2wa_
    complexed with amp
8. Domain for 2blp:
  - Domain d2blpa_: 2blp A: [128739]
    automated match to d1a2wa_
    complexed with cl
9. Domain for 2blz:
  - Domain d2blza_: 2blz A: [128747]
    automated match to d1a2wa_
    complexed with cl
10. Domain for 2e33:
  - Domain d2e33b_: 2e33 B: [132021]
    Other proteins in same PDB: d2e33a_
    automated match to d1a2wa_
11. Domain for 2e3w:
  - Domain d2e3wa_: 2e3w A: [146678]
    automated match to d1a2wa_
    complexed with cl
12. Domains for 2g4w:
  1. Domain d2g4wa_: 2g4w A: [134613]
    automated match to d1a2wa_
    complexed with cl, so4
  2. Domain d2g4wb_: 2g4w B: [134614]
    automated match to d1a2wa_
    complexed with cl, so4
13. Domain for 2g4x:
  - Domain d2g4xa_: 2g4x A: [134615]
    automated match to d1a2wa_
    complexed with cl, so4
14. Domains for 2g8q:
  1. Domain d2g8qa_: 2g8q A: [134781]
    automated match to d1a2wa_
  2. Domain d2g8qb_: 2g8q B: [134782]
    automated match to d1a2wa_
15. Domains for 2g8r:
  1. Domain d2g8ra_: 2g8r A: [134783]
    automated match to d1a2wa_
    complexed with n3e
  2. Domain d2g8rb_: 2g8r B: [134784]
    automated match to d1a2wa_
    complexed with n3e
16. Domain for 2op2:
  - Domain d2op2a_: 2op2 A: [166810]
    automated match to d1a2wa_
    mutant
17. Domains for 2p42:
  1. Domain d2p42a_: 2p42 A: [149194]
    Other proteins in same PDB: d2p42b_, d2p42d_
    automated match to d1a2wa_
    protein/RNA complex; complexed with mg
  2. Domain d2p42c_: 2p42 C: [149196]
    Other proteins in same PDB: d2p42b_, d2p42d_
    automated match to d1a2wa_
    protein/RNA complex; complexed with mg
18. Domain for 2p43:
  - Domain d2p43a_: 2p43 A: [149198]
    Other proteins in same PDB: d2p43b_
    automated match to d1a2wa_
    protein/RNA complex
19. Domain for 2p44:
  - Domain d2p44a_: 2p44 A: [149200]
    Other proteins in same PDB: d2p44b_
    automated match to d1a2wa_
    protein/RNA complex
20. Domain for 2p45:
  - Domain d2p45a_: 2p45 A: [149201]
    Other proteins in same PDB: d2p45b_
    automated match to d1a2wa_
    protein/RNA complex; complexed with so4
21. Domains for 2p46:
  1. Domain d2p46a_: 2p46 A: [149202]
    Other proteins in same PDB: d2p46b_, d2p46d_
    automated match to d1a2wa_
    protein/RNA complex; complexed with zn
  2. Domain d2p46c_: 2p46 C: [149203]
    Other proteins in same PDB: d2p46b_, d2p46d_
    automated match to d1a2wa_
    protein/RNA complex; complexed with zn
22. Domain for 2p47:
  - Domain d2p47a_: 2p47 A: [149204]
    Other proteins in same PDB: d2p47b_
    automated match to d1a2wa_
    protein/RNA complex
23. Domain for 2p48:
  - Domain d2p48a_: 2p48 A: [149205]
    Other proteins in same PDB: d2p48b_
    automated match to d1a2wa_
    protein/RNA complex; complexed with so4
24. Domain for 2p49:
  - Domain d2p49a_: 2p49 A: [149206]
    Other proteins in same PDB: d2p49b_
    automated match to d1a2wa_
    protein/RNA complex; complexed with po4
25. Domains for 2p4a:
  1. Domain d2p4aa_: 2p4a A: [149208]
    Other proteins in same PDB: d2p4ab_, d2p4ad_
    automated match to d1a2wa_
    protein/RNA complex; complexed with so4
  2. Domain d2p4ac_: 2p4a C: [149209]
    Other proteins in same PDB: d2p4ab_, d2p4ad_
    automated match to d1a2wa_
    protein/RNA complex; complexed with so4
26. Domain for 2qca:
  - Domain d2qcaa_: 2qca A: [150652]
    automated match to d1a2wa_
    complexed with dgp
27. Domains for 2w5g:
  1. Domain d2w5ga_: 2w5g A: [169063]
    automated match to d1a2wa_
    protein/RNA complex; complexed with atp
  2. Domain d2w5gb_: 2w5g B: [169064]
    automated match to d1a2wa_
    protein/RNA complex; complexed with atp
28. Domains for 2w5i:
  1. Domain d2w5ia_: 2w5i A: [169066]
    automated match to d1a2wa_
    protein/RNA complex; complexed with atp
  2. Domain d2w5ib_: 2w5i B: [169067]
    automated match to d1a2wa_
    protein/RNA complex; complexed with atp
29. Domains for 2w5k:
  1. Domain d2w5ka_: 2w5k A: [169068]
    automated match to d1a2wa_
    protein/RNA complex; complexed with ndp
  2. Domain d2w5kb_: 2w5k B: [169069]
    automated match to d1a2wa_
    protein/RNA complex; complexed with ndp
30. Domains for 2w5l:
  1. Domain d2w5la_: 2w5l A: [169070]
    automated match to d1a2wa_
    protein/RNA complex; complexed with nap
  2. Domain d2w5lb_: 2w5l B: [169071]
    automated match to d1a2wa_
    protein/RNA complex; complexed with nap
31. Domains for 2w5m:
  1. Domain d2w5ma_: 2w5m A: [169072]
    automated match to d1a2wa_
    protein/RNA complex; complexed with pop
  2. Domain d2w5mb_: 2w5m B: [169073]
    automated match to d1a2wa_
    protein/RNA complex; complexed with pop
32. Domains for 2xog:
  1. Domain d2xoga_: 2xog A: [170257]
    automated match to d1a2wa_
    complexed with sfb
  2. Domain d2xogb_: 2xog B: [170258]
    automated match to d1a2wa_
    complexed with sfb
33. Domains for 2xoi:
  1. Domain d2xoia_: 2xoi A: [170259]
    automated match to d1a2wa_
    complexed with sfb
  2. Domain d2xoib_: 2xoi B: [170260]
    automated match to d1a2wa_
    complexed with sfb
34. Domain for 3a1r:
  - Domain d3a1ra_: 3a1r A: [171644]
    automated match to d1a2wa_
    complexed with dod
35. Domains for 3d6o:
  1. Domain d3d6oa_: 3d6o A: [173717]
    automated match to d1a2wa_
    complexed with u1s
  2. Domain d3d6ob_: 3d6o B: [173718]
    automated match to d1a2wa_
    complexed with u1s
36. Domains for 3d6p:
  1. Domain d3d6pa_: 3d6p A: [173719]
    automated match to d1a2wa_
    complexed with u2s
  2. Domain d3d6pb_: 3d6p B: [173720]
    automated match to d1a2wa_
    complexed with u2s
37. Domains for 3d6q:
  1. Domain d3d6qa_: 3d6q A: [173721]
    automated match to d1a2wa_
    complexed with flc, u3s
  2. Domain d3d6qb_: 3d6q B: [173722]
    automated match to d1a2wa_
    complexed with flc, u3s
38. Domains for 3d7b:
  1. Domain d3d7ba_: 3d7b A: [173742]
    automated match to d1a2wa_
    complexed with flc, u4s
  2. Domain d3d7bb_: 3d7b B: [173743]
    automated match to d1a2wa_
    complexed with flc, u4s
39. Domains for 3d8y:
  1. Domain d3d8ya_: 3d8y A: [173756]
    automated match to d1a2wa_
    complexed with flc, t3s
  2. Domain d3d8yb_: 3d8y B: [173757]
    automated match to d1a2wa_
    complexed with flc, t3s
40. Domains for 3d8z:
  1. Domain d3d8za_: 3d8z A: [173758]
    automated match to d1a2wa_
    complexed with flc, txs
  2. Domain d3d8zb_: 3d8z B: [173759]
    automated match to d1a2wa_
    complexed with flc, txs
41. Domains for 3djo:
  1. Domain d3djoa_: 3djo A: [173997]
    automated match to d11baa_
    complexed with act, u2p
  2. Domain d3djob_: 3djo B: [173998]
    automated match to d11baa_
    complexed with act, u2p
42. Domains for 3djp:
  1. Domain d3djpa_: 3djp A: [173999]
    automated match to d11baa_
    complexed with ua3
  2. Domain d3djpb_: 3djp B: [174000]
    automated match to d11baa_
    complexed with ua3
43. Domains for 3djq:
  1. Domain d3djqa_: 3djq A: [174001]
    automated match to d11baa_
    complexed with udp
  2. Domain d3djqb_: 3djq B: [174002]
    automated match to d11baa_
    complexed with udp
44. Domains for 3djv:
  1. Domain d3djva_: 3djv A: [174010]
    automated match to d11baa_
    complexed with c3p
  2. Domain d3djvb_: 3djv B: [174011]
    automated match to d11baa_
    complexed with c3p
45. Domains for 3djx:
  1. Domain d3djxa_: 3djx A: [174012]
    automated match to d11baa_
    complexed with c5p
  2. Domain d3djxb_: 3djx B: [174013]
    automated match to d11baa_
    complexed with c5p
46. Domains for 3dxg:
  1. Domain d3dxga_: 3dxg A: [174323]
    automated match to d1a2wa_
    complexed with u5p
  2. Domain d3dxgb_: 3dxg B: [174324]
    automated match to d1a2wa_
    complexed with u5p
47. Domains for 3dxh:
  1. Domain d3dxha_: 3dxh A: [174325]
    automated match to d1a2wa_
    complexed with udp
  2. Domain d3dxhb_: 3dxh B: [174326]
    automated match to d1a2wa_
    complexed with udp
48. Domains for 3eux:
  1. Domain d3euxa_: 3eux A: [175224]
    automated match to d1a2wa_
  2. Domain d3euxb_: 3eux B: [175225]
    automated match to d1a2wa_
49. Domains for 3euy:
  1. Domain d3euya_: 3euy A: [175226]
    automated match to d1a2wa_
    complexed with dio
  2. Domain d3euyb_: 3euy B: [175227]
    automated match to d1a2wa_
    complexed with dio
50. Domains for 3euz:
  1. Domain d3euza_: 3euz A: [175228]
    automated match to d1a2wa_
    complexed with dmf
  2. Domain d3euzb_: 3euz B: [175229]
    automated match to d1a2wa_
    complexed with dmf
51. Domains for 3ev0:
  1. Domain d3ev0a_: 3ev0 A: [175230]
    automated match to d1a2wa_
    complexed with dms
  2. Domain d3ev0b_: 3ev0 B: [175231]
    automated match to d1a2wa_
    complexed with dms
52. Domains for 3ev1:
  1. Domain d3ev1a_: 3ev1 A: [175232]
    automated match to d1a2wa_
    complexed with hez
  2. Domain d3ev1b_: 3ev1 B: [175233]
    automated match to d1a2wa_
    complexed with hez
53. Domains for 3ev2:
  1. Domain d3ev2a_: 3ev2 A: [175234]
    automated match to d1a2wa_
    complexed with ipa
  2. Domain d3ev2b_: 3ev2 B: [175235]
    automated match to d1a2wa_
    complexed with ipa
54. Domains for 3ev3:
  1. Domain d3ev3a_: 3ev3 A: [175236]
    automated match to d1a2wa_
    complexed with tbu
  2. Domain d3ev3b_: 3ev3 B: [175237]
    automated match to d1a2wa_
    complexed with tbu
55. Domains for 3ev4:
  1. Domain d3ev4a_: 3ev4 A: [175238]
    automated match to d1a2wa_
    complexed with etf
  2. Domain d3ev4b_: 3ev4 B: [175239]
    automated match to d1a2wa_
    complexed with etf
56. Domains for 3ev5:
  1. Domain d3ev5a_: 3ev5 A: [175240]
    automated match to d1a2wa_
    complexed with tmo
  2. Domain d3ev5b_: 3ev5 B: [175241]
    automated match to d1a2wa_
    complexed with tmo
57. Domains for 3ev6:
  1. Domain d3ev6a_: 3ev6 A: [175242]
    automated match to d1a2wa_
    complexed with rsf
  2. Domain d3ev6b_: 3ev6 B: [175243]
    automated match to d1a2wa_
    complexed with rsf
58. Domain for 3i67:
  - Domain d3i67a_: 3i67 A: [178108]
    automated match to d1a2wa_
    complexed with cl
59. Domain for 3i6f:
  - Domain d3i6fa_: 3i6f A: [178109]
    automated match to d1a2wa_
    complexed with cl
60. Domain for 3i6h:
  - Domain d3i6ha_: 3i6h A: [178112]
    automated match to d1a2wa_
    complexed with cl
61. Domain for 3i6j:
  - Domain d3i6ja_: 3i6j A: [178113]
    automated match to d1a2wa_
    complexed with cl
62. Domain for 3i7w:
  - Domain d3i7wa_: 3i7w A: [178139]
    automated match to d1a2wa_
    complexed with cl
63. Domain for 3i7x:
  - Domain d3i7xa_: 3i7x A: [178140]
    automated match to d1a2wa_
    complexed with cl
64. Domain for 3i7y:
  - Domain d3i7ya_: 3i7y A: [178141]
    automated match to d1a2wa_
    complexed with cl
65. Domains for 3jw1:
  1. Domain d3jw1a_: 3jw1 A: [178855]
    automated match to d1a2wa_
    complexed with u5p
  2. Domain d3jw1b_: 3jw1 B: [178856]
    automated match to d1a2wa_
    complexed with u5p
66. Domain for 3lxo:
  - Domain d3lxoa_: 3lxo A: [180626]
    automated match to d1a2wa_
    protein/RNA complex; complexed with t3p
67. Domain for 3mzq:
  - Domain d3mzqa_: 3mzq A: [181731]
    automated match to d1a2wa_
    complexed with cl, so4
68. Domain for 3mzr:
  - Domain d3mzra_: 3mzr A: [181732]
    automated match to d1a2wa_
    complexed with cl, so4
69. Domain for 3qsk:
  - Domain d3qska_: 3qsk A: [184609]
    Other proteins in same PDB: d3qskb_
    automated match to d1a2wa_
    protein/RNA complex
70. Domain for 4k7m:
  - Domain d4k7ma_: 4k7m A: [229283]
    automated match to d1kf3a_
    complexed with hg, so4
Frog (Rana pipiens) [TaxId:8404] [188156] (4 PDB entries)
1. Domain for 1yv7:
  - Domain d1yv7a_: 1yv7 A: [162310]
    automated match to d1onca_
    complexed with so4
2. Domain for 2kb6:
  - Domain d2kb6a_: 2kb6 A: [242449]
    automated match to d3fd7a_
3. Domains for 3fd7:
  1. Domain d3fd7a_: 3fd7 A: [175705]
    automated match to d1onca_
    complexed with edo, gol, so4
  2. Domain d3fd7b_: 3fd7 B: [175706]
    automated match to d1onca_
    complexed with edo, gol, so4
4. Domain for 3u01:
  - Domain d3u01a_: 3u01 A: [186045]
    automated match to d1onca_
    complexed with act, so4; mutant
Human (Homo sapiens) [TaxId:9606] [186903] (6 PDB entries)
1. Domains for 2e0j:
  1. Domain d2e0ja_: 2e0j A: [163783]
    automated match to d1dzaa_
    mutant
  2. Domain d2e0jb_: 2e0j B: [163784]
    automated match to d1dzaa_
    mutant
2. Domains for 2e0l:
  1. Domain d2e0la_: 2e0l A: [163785]
    automated match to d1dzaa_
    complexed with cd, cl; mutant
  2. Domain d2e0lb_: 2e0l B: [163786]
    automated match to d1dzaa_
    complexed with cd, cl; mutant
3. Domains for 2e0m:
  1. Domain d2e0ma_: 2e0m A: [163787]
    automated match to d1dzaa_
    complexed with cd, cl; mutant
  2. Domain d2e0mb_: 2e0m B: [163788]
    automated match to d1dzaa_
    complexed with cd, cl; mutant
4. Domains for 2e0o:
  1. Domain d2e0oa_: 2e0o A: [163789]
    automated match to d1dzaa_
    complexed with gol, so4; mutant
  2. Domain d2e0ob_: 2e0o B: [163790]
    automated match to d1dzaa_
    complexed with gol, so4; mutant
5. Domain for 4ahj:
  - Domain d4ahja_: 4ahj A: [194579]
    automated match to d1a4yb_
    complexed with tar; mutant
6. Domains for 4b36:
  1. Domain d4b36a_: 4b36 A: [201562]
    automated match to d4b36b_
    complexed with cl
  2. Domain d4b36b_: 4b36 B: [194194]
    automated match to d1a4yb_
    complexed with cl
Mouse (Mus musculus) [TaxId:10090] [187495] (5 PDB entries)
1. Domain for 2bwk:
  - Domain d2bwka_: 2bwk A: [163200]
    automated match to d1a4yb_
    complexed with so4
2. Domain for 2bwl:
  - Domain d2bwla_: 2bwl A: [163201]
    automated match to d1a4yb_
    complexed with po4
3. Domains for 3tsr:
  1. Domain d3tsra_: 3tsr A: [194678]
    Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
    automated match to d1rraa_
    complexed with edo, peg
  2. Domain d3tsrb_: 3tsr B: [200873]
    Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
    automated match to d3tsra_
    complexed with edo, peg
  3. Domain d3tsrc_: 3tsr C: [200874]
    Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
    automated match to d3tsra_
    complexed with edo, peg
  4. Domain d3tsrd_: 3tsr D: [200875]
    Other proteins in same PDB: d3tsre_, d3tsrf_, d3tsrg_, d3tsrh_
    automated match to d3tsra_
    complexed with edo, peg
4. Domain for 3zbv:
  - Domain d3zbva_: 3zbv A: [194167]
    automated match to d2bwla_
    complexed with gol, so4, zn
5. Domains for 3zbw:
  1. Domain d3zbwa_: 3zbw A: [194169]
    automated match to d2bwla_
    complexed with acy, so4, zn
  2. Domain d3zbwb_: 3zbw B: [194168]
    automated match to d2bwla_
    complexed with acy, so4, zn
Rattus norvegicus [TaxId:10116] [259282] (1 PDB entry)
- Domain for 4qfj:
  - Domain d4qfja_: 4qfj A: [259283]
    automated match to d2bwla_
    complexed with acy, h1s, zn

More info for Protein automated matches from d.5.1.1: Ribonuclease A-like

Timeline for Protein automated matches from d.5.1.1: Ribonuclease A-like:

Protein automated matches from d.5.1.1: Ribonuclease A-like first appeared in SCOPe 2.01
Protein automated matches from d.5.1.1: Ribonuclease A-like appears in SCOPe 2.03
Protein automated matches from d.5.1.1: Ribonuclease A-like appears in SCOPe 2.05
Protein automated matches from d.5.1.1: Ribonuclease A-like appears in the current release, SCOPe 2.08