SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2192501Fold d.129: TBP-like [55944] (11 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 2192753Superfamily d.129.3: Bet v1-like [55961] (11 families) (S)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
  5. 2192754Family d.129.3.1: Pathogenesis-related protein 10 (PR10)-like [55962] (5 protein domains)
  6. 2192817Protein automated matches [190058] (6 species)
    not a true protein

Species:

  1. 2192818Betula pendula [TaxId:3505] [195294] (4 PDB entries)
    1. Domain for 3k78:
    2. Domain for 4a84:
    3. Domain for 4a8u:
    4. Domain for 4a8v:
  2. 2192823Carrot (Daucus carota) [TaxId:4039] [189035] (1 PDB entry)
  3. 2192828Pachyrhizus erosus [TaxId:109171] [186778] (2 PDB entries)
    1. Domain for 1tw0:
    2. Domains for 1txc:
      1. 2192829Domain d1txca2: 1txc A:1-147 [119384]
        Other proteins in same PDB: d1txca3, d1txcb3
        automated match to d1icxa_
        complexed with 2an
      2. 2192830Domain d1txcb2: 1txc B:1-147 [119385]
        Other proteins in same PDB: d1txca3, d1txcb3
        automated match to d1icxa_
        complexed with 2an
  4. 2192832Soybean (Glycine max) [TaxId:3847] [255325] (1 PDB entry)
  5. 2192834Yellow lupine (Lupinus luteus) [TaxId:3873] [186854] (2 PDB entries)
    1. Domain for 2qim:
    2. Domain for 3e85:
  6. 2286530Malus domestica [TaxId:3750] [329831] (1 PDB entry)

More info for Protein automated matches from d.129.3.1: Pathogenesis-related protein 10 (PR10)-like

Timeline for Protein automated matches from d.129.3.1: Pathogenesis-related protein 10 (PR10)-like: