Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1565956Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 1568602Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 1569213Family c.1.8.3: beta-glycanases [51487] (27 proteins)
    consist of a number of sequence families
  6. 1569823Protein automated matches [190057] (20 species)
    not a true protein

Species:

  1. 1569824Aspergillus niger [TaxId:5061] [260290] (1 PDB entry)
  2. 1569827Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
  3. 1569829Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
  4. 1569831Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    1. Domain for 2ccr:
    2. Domains for 2gft:
      1. 1569832Domain d2gfta_: 2gft A: [164682]
        automated match to d1ur0b_
        complexed with ca; mutant
      2. 1569833Domain d2gftb_: 2gft B: [164683]
        automated match to d1ur0b_
        complexed with ca; mutant
    3. Domains for 2j74:
      1. 1569835Domain d2j74a_: 2j74 A: [147901]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
      2. 1569836Domain d2j74b_: 2j74 B: [147902]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
  5. 1569837Bacillus sp. [TaxId:65673] [187690] (2 PDB entries)
    1. Domains for 2f8q:
      1. 1569838Domain d2f8qa_: 2f8q A: [164282]
        automated match to d1hiza_
        complexed with mg
      2. 1569839Domain d2f8qb_: 2f8q B: [164283]
        automated match to d1hiza_
        complexed with mg
    2. Domains for 2fgl:
      1. 1569840Domain d2fgla_: 2fgl A: [164353]
        automated match to d1hiza_
        complexed with lxc, mg
      2. 1569841Domain d2fglb_: 2fgl B: [164354]
        automated match to d1hiza_
        complexed with lxc, mg
  6. 1569842Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    1. Domain for 3emc:
    2. Domain for 3emq:
    3. Domain for 3emz:
  7. Bacteroides thetaiotaomicron [TaxId:226186] [255614] (7 PDB entries)
    1. Domains for 2vjx:
      1. 1569847Domain d2vjxa5: 2vjx A:331-678 [153207]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
      2. 1569848Domain d2vjxb5: 2vjx B:331-678 [153212]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
    2. Domains for 2vl4:
      1. 1569851Domain d2vl4a5: 2vl4 A:331-678 [153258]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
      2. 1569852Domain d2vl4b5: 2vl4 B:331-678 [153263]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
    3. Domains for 2vmf:
      1. 1569855Domain d2vmfa5: 2vmf A:331-678 [153320]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
      2. 1569856Domain d2vmfb5: 2vmf B:331-678 [153325]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
    4. Domains for 2vo5:
      1. 1569857Domain d2vo5a5: 2vo5 A:331-678 [153354]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
      2. 1569858Domain d2vo5b5: 2vo5 B:331-678 [153359]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
    5. Domains for 2vot:
      1. 1569853Domain d2vota5: 2vot A:331-678 [153383]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
      2. 1569854Domain d2votb5: 2vot B:331-678 [153388]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
    6. Domains for 2vr4:
      1. 1569849Domain d2vr4a5: 2vr4 A:331-678 [153499]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
      2. 1569850Domain d2vr4b5: 2vr4 B:331-678 [153504]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
    7. Domains for 2wbk:
      1. 1569859Domain d2wbka3: 2wbk A:331-678 [244098]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
      2. 1569860Domain d2wbkb3: 2wbk B:331-678 [244103]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
  8. Bacteroides thetaiotaomicron [TaxId:818] [255622] (1 PDB entry)
  9. 1569864Cellulomonas fimi [TaxId:1708] [231537] (1 PDB entry)
  10. 1569867Cellvibrio mixtus [TaxId:39650] [255089] (1 PDB entry)
  11. 1569869Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    1. Domain for 2bvd:
    2. Domain for 2cip:
    3. Domain for 2v3g:
    4. Domain for 2vi0:
  12. 1569874Emericella nidulans [TaxId:162425] [226738] (1 PDB entry)
  13. 1569876Podospora anserina [TaxId:5145] [256160] (1 PDB entry)
  14. 1569878Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
  15. 1569880Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (2 PDB entries)
    1. Domains for 4hpg:
      1. 1569881Domain d4hpga_: 4hpg A: [229225]
        automated match to d3em5a_
        complexed with nag, peg
      2. 1569882Domain d4hpgb_: 4hpg B: [229227]
        automated match to d3em5a_
        complexed with nag, peg
      3. 1569883Domain d4hpgc_: 4hpg C: [229228]
        automated match to d3em5a_
        complexed with nag, peg
      4. 1569884Domain d4hpgd_: 4hpg D: [229224]
        automated match to d3em5a_
        complexed with nag, peg
    2. Domains for 4iis:
      1. 1569885Domain d4iisa_: 4iis A: [229244]
        automated match to d3em5a_
        complexed with cac, flc, na
      2. 1569886Domain d4iisb_: 4iis B: [229245]
        automated match to d3em5a_
        complexed with cac, flc, na
      3. 1569887Domain d4iisc_: 4iis C: [229246]
        automated match to d3em5a_
        complexed with cac, flc, na
      4. 1569888Domain d4iisd_: 4iis D: [229243]
        automated match to d3em5a_
        complexed with cac, flc, na
  16. 1569889Soil metagenome [TaxId:410658] [236610] (2 PDB entries)
    1. Domains for 4k68:
      1. 1569892Domain d4k68a_: 4k68 A: [253160]
        automated match to d1ur2a_
        complexed with gol
      2. 1569893Domain d4k68b_: 4k68 B: [253161]
        automated match to d1ur2a_
        complexed with gol
    2. Domains for 4m1r:
      1. 1569890Domain d4m1ra_: 4m1r A: [236612]
        automated match to d1egza_
        complexed with trs
      2. 1569891Domain d4m1rb_: 4m1r B: [236611]
        automated match to d1egza_
        complexed with trs
  17. 1569894Streptomyces olivaceoviridis [TaxId:1921] [225150] (8 PDB entries)
    1. Domains for 2d1z:
      1. 1569895Domain d2d1za1: 2d1z A:1-301 [203861]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1569896Domain d2d1zb1: 2d1z B:501-801 [203863]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    2. Domains for 2d20:
      1. 1569901Domain d2d20a1: 2d20 A:1-301 [203865]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
      2. 1569902Domain d2d20b1: 2d20 B:501-801 [203867]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
    3. Domains for 2d22:
      1. 1569897Domain d2d22a1: 2d22 A:1-301 [203869]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1569898Domain d2d22b1: 2d22 B:501-801 [203871]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    4. Domains for 2d23:
      1. 1569903Domain d2d23a1: 2d23 A:1-301 [203873]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
      2. 1569904Domain d2d23b1: 2d23 B:501-801 [203875]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
    5. Domains for 2d24:
      1. 1569899Domain d2d24a1: 2d24 A:1-301 [203877]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 1569900Domain d2d24b1: 2d24 B:501-801 [203879]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    6. Domain for 2g3i:
    7. Domain for 2g3j:
    8. Domains for 2g4f:
      1. 1569907Domain d2g4fa_: 2g4f A: [204297]
        automated match to d1e0xa_
        mutant
      2. 1569908Domain d2g4fb_: 2g4f B: [204298]
        automated match to d1e0xa_
        mutant
  18. 1569909Thermoascus aurantiacus [TaxId:5087] [190006] (3 PDB entries)
    1. Domains for 3nyd:
      1. 1569912Domain d3nyda_: 3nyd A: [182626]
        automated match to d1goka_
        complexed with 3ny, act, so4
      2. 1569913Domain d3nydb_: 3nyd B: [182627]
        automated match to d1goka_
        complexed with 3ny, act, so4
    2. Domain for 3o2l:
    3. Domains for 4bs0:
      1. 1569910Domain d4bs0a_: 4bs0 A: [228291]
        automated match to d1goka_
        complexed with 6nt, so4
      2. 1569911Domain d4bs0b_: 4bs0 B: [234278]
        automated match to d4bs0a_
        complexed with 6nt, so4
  19. 1569915Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    1. Domains for 3niy:
      1. 1569916Domain d3niya_: 3niy A: [182330]
        automated match to d1vbra1
        complexed with act, so4
      2. 1569917Domain d3niyb_: 3niy B: [182331]
        automated match to d1vbra1
        complexed with act, so4
    2. Domains for 3nj3:
      1. 1569918Domain d3nj3a_: 3nj3 A: [182333]
        automated match to d1vbra1
        complexed with act, so4, xyp
      2. 1569919Domain d3nj3b_: 3nj3 B: [182334]
        automated match to d1vbra1
        complexed with act, so4, xyp
  20. 1569920Yeast (Candida albicans) [TaxId:5476] [188406] (6 PDB entries)
    1. Domain for 2pbo:
    2. Domain for 2pc8:
    3. Domain for 2pf0:
    4. Domain for 3n9k:
    5. Domain for 3o6a:
    6. Domain for 4m81:

More info for Protein automated matches from c.1.8.3: beta-glycanases

Timeline for Protein automated matches from c.1.8.3: beta-glycanases: