SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2081496Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2082160Family c.1.8.3: beta-glycanases [51487] (27 protein domains)
    consist of a number of sequence families
  6. 2082782Protein automated matches [190057] (26 species)
    not a true protein

Species:

  1. 2082783Aspergillus niger [TaxId:425011] [311484] (1 PDB entry)
  2. 2082786Aspergillus niger [TaxId:5061] [260290] (4 PDB entries)
    1. Domains for 3wh9:
      1. 2082787Domain d3wh9a_: 3wh9 A: [260291]
        automated match to d3ziza_
        complexed with cl, nag, trs
      2. 2082788Domain d3wh9b_: 3wh9 B: [260292]
        automated match to d3ziza_
        complexed with cl, nag, trs
    2. Domain for 5i77:
    3. Domains for 5i78:
      1. 2284044Domain d5i78a1: 5i78 A:31-331 [327345]
        Other proteins in same PDB: d5i78a2, d5i78a3, d5i78b2, d5i78b3
        automated match to d1gzja_
        complexed with ca, nag, pge
      2. 2284114Domain d5i78b1: 5i78 B:31-331 [327415]
        Other proteins in same PDB: d5i78a2, d5i78a3, d5i78b2, d5i78b3
        automated match to d1gzja_
        complexed with ca, nag, pge
    4. Domains for 5i79:
      1. 2284117Domain d5i79b1: 5i79 B:31-331 [327418]
        Other proteins in same PDB: d5i79a2, d5i79b2, d5i79b3
        automated match to d1gzja_
        complexed with ca, ctt, nag, pge; mutant
      2. 2284123Domain d5i79a1: 5i79 A:31-331 [327424]
        Other proteins in same PDB: d5i79a2, d5i79b2, d5i79b3
        automated match to d1gzja_
        complexed with ca, ctt, nag, pge; mutant
  3. 2082789Bacillus agaradhaerens [TaxId:76935] [187246] (1 PDB entry)
  4. 2082791Bacillus halodurans [TaxId:86665] [188453] (1 PDB entry)
  5. 2082793Bacillus licheniformis [TaxId:1402] [187025] (3 PDB entries)
    1. Domain for 2ccr:
    2. Domains for 2gft:
      1. 2082794Domain d2gfta_: 2gft A: [164682]
        automated match to d1ur0b_
        complexed with ca; mutant
      2. 2082795Domain d2gftb_: 2gft B: [164683]
        automated match to d1ur0b_
        complexed with ca; mutant
    3. Domains for 2j74:
      1. 2082797Domain d2j74a_: 2j74 A: [147901]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
      2. 2082798Domain d2j74b_: 2j74 B: [147902]
        automated match to d1ur0b_
        complexed with b2g, b4g, ca
  6. 2082799Bacillus sp. [TaxId:65673] [187690] (9 PDB entries)
    1. Domains for 2f8q:
      1. 2082804Domain d2f8qa_: 2f8q A: [164282]
        automated match to d1hiza_
        complexed with mg
      2. 2082805Domain d2f8qb_: 2f8q B: [164283]
        automated match to d1hiza_
        complexed with mg
    2. Domains for 2fgl:
      1. 2082800Domain d2fgla_: 2fgl A: [164353]
        automated match to d1hiza_
        complexed with lxc, mg
      2. 2082801Domain d2fglb_: 2fgl B: [164354]
        automated match to d1hiza_
        complexed with lxc, mg
    3. Domains for 4qce:
      1. 2082807Domain d4qcea_: 4qce A: [272942]
        automated match to d2fgla_
        complexed with mg, na
      2. 2082808Domain d4qceb_: 4qce B: [272944]
        automated match to d2fgla_
        complexed with mg, na
    4. Domain for 4qcf:
    5. Domains for 4qdm:
      1. 2082802Domain d4qdma_: 4qdm A: [272955]
        automated match to d2fgla_
        complexed with gol, mg, na; mutant
      2. 2082803Domain d4qdmb_: 4qdm B: [272951]
        automated match to d2fgla_
        complexed with gol, mg, na; mutant
    6. Domains for 5eb8:
      1. 2280852Domain d5eb8b_: 5eb8 B: [324153]
        automated match to d4qdma_
        complexed with mg, na; mutant
      2. 2280860Domain d5eb8a_: 5eb8 A: [324161]
        automated match to d4qdma_
        complexed with mg, na; mutant
    7. Domain for 5eba:
    8. Domains for 5efd:
      1. 2281075Domain d5efdb_: 5efd B: [324376]
        automated match to d4qdma_
        complexed with cl, edo, mg, na; mutant
      2. 2281151Domain d5efda_: 5efd A: [324452]
        automated match to d4qdma_
        complexed with cl, edo, mg, na; mutant
    9. Domains for 5eff:
      1. 2281082Domain d5effa_: 5eff A: [324383]
        automated match to d4qdma_
        complexed with cl, mg, na; mutant
      2. 2281126Domain d5effb_: 5eff B: [324427]
        automated match to d4qdma_
        complexed with cl, mg, na; mutant
  7. 2082809Bacillus sp. [TaxId:89769] [189058] (3 PDB entries)
    1. Domain for 3emc:
    2. Domain for 3emq:
    3. Domain for 3emz:
  8. 2082813Bacteroides thetaiotaomicron [TaxId:226186] [255614] (7 PDB entries)
    1. Domains for 2vjx:
      1. 2082814Domain d2vjxa5: 2vjx A:331-678 [153207]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4, d2vjxb6
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
      2. 2082815Domain d2vjxb5: 2vjx B:331-678 [153212]
        Other proteins in same PDB: d2vjxa1, d2vjxa2, d2vjxa3, d2vjxa4, d2vjxb1, d2vjxb2, d2vjxb3, d2vjxb4, d2vjxb6
        automated match to d2je8a5
        complexed with br, cl, edo, ifl
    2. Domains for 2vl4:
      1. 2082818Domain d2vl4a5: 2vl4 A:331-678 [153258]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4, d2vl4b6
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
      2. 2082819Domain d2vl4b5: 2vl4 B:331-678 [153263]
        Other proteins in same PDB: d2vl4a1, d2vl4a2, d2vl4a3, d2vl4a4, d2vl4b1, d2vl4b2, d2vl4b3, d2vl4b4, d2vl4b6
        automated match to d2je8a5
        complexed with br, cl, edo, mnm
    3. Domains for 2vmf:
      1. 2082822Domain d2vmfa5: 2vmf A:331-678 [153320]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4, d2vmfb6
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
      2. 2082823Domain d2vmfb5: 2vmf B:331-678 [153325]
        Other proteins in same PDB: d2vmfa1, d2vmfa2, d2vmfa3, d2vmfa4, d2vmfb1, d2vmfb2, d2vmfb3, d2vmfb4, d2vmfb6
        automated match to d2je8a5
        complexed with br, cl, edo, mvl
    4. Domains for 2vo5:
      1. 2082824Domain d2vo5a5: 2vo5 A:331-678 [153354]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4, d2vo5b6
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
      2. 2082825Domain d2vo5b5: 2vo5 B:331-678 [153359]
        Other proteins in same PDB: d2vo5a1, d2vo5a2, d2vo5a3, d2vo5a4, d2vo5b1, d2vo5b2, d2vo5b3, d2vo5b4, d2vo5b6
        automated match to d2je8a5
        complexed with br, cl, edo, vbz
    5. Domains for 2vot:
      1. 2082820Domain d2vota5: 2vot A:331-678 [153383]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4, d2votb6
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
      2. 2082821Domain d2votb5: 2vot B:331-678 [153388]
        Other proteins in same PDB: d2vota1, d2vota2, d2vota3, d2vota4, d2votb1, d2votb2, d2votb3, d2votb4, d2votb6
        automated match to d2je8a5
        complexed with br, cl, edo, nhv
    6. Domains for 2vr4:
      1. 2082816Domain d2vr4a5: 2vr4 A:331-678 [153499]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4, d2vr4b6
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
      2. 2082817Domain d2vr4b5: 2vr4 B:331-678 [153504]
        Other proteins in same PDB: d2vr4a1, d2vr4a2, d2vr4a3, d2vr4a4, d2vr4b1, d2vr4b2, d2vr4b3, d2vr4b4, d2vr4b6
        automated match to d2je8a5
        complexed with 17b, br, cl, edo
    7. Domains for 2wbk:
      1. 2082826Domain d2wbka3: 2wbk A:331-678 [244098]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5, d2wbkb6
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
      2. 2082827Domain d2wbkb3: 2wbk B:331-678 [244103]
        Other proteins in same PDB: d2wbka1, d2wbka2, d2wbka4, d2wbka5, d2wbkb1, d2wbkb2, d2wbkb4, d2wbkb5, d2wbkb6
        automated match to d2je8a5
        complexed with br, cl, edo, m2f
  9. Bacteroides thetaiotaomicron [TaxId:818] [255622] (1 PDB entry)
  10. 2082831Cellulomonas fimi [TaxId:1708] [231537] (1 PDB entry)
  11. 2082834Cellvibrio mixtus [TaxId:39650] [255089] (1 PDB entry)
  12. 2082836Clostridium thermocellum [TaxId:1515] [187247] (4 PDB entries)
    1. Domain for 2bvd:
    2. Domain for 2cip:
    3. Domain for 2v3g:
    4. Domain for 2vi0:
  13. 2082841Emericella nidulans [TaxId:162425] [226738] (1 PDB entry)
  14. 2082843Hypocrea jecorina [TaxId:431241] [311485] (1 PDB entry)
  15. 2082845Podospora anserina [TaxId:5145] [256160] (1 PDB entry)
  16. 2082847Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId:155077] [188920] (1 PDB entry)
  17. 2082849Rubber tree (Hevea brasiliensis) [TaxId:3981] [189057] (4 PDB entries)
    1. Domains for 3em5:
      1. 2082858Domain d3em5a_: 3em5 A: [305288]
        automated match to d4hpga_
        complexed with nag, peg
      2. 2082859Domain d3em5b_: 3em5 B: [305289]
        automated match to d4hpga_
        complexed with nag, peg
      3. 2082860Domain d3em5c_: 3em5 C: [305290]
        automated match to d4hpga_
        complexed with nag, peg
      4. 2082861Domain d3em5d_: 3em5 D: [305291]
        automated match to d4hpga_
        complexed with nag, peg
    2. Domains for 3f55:
      1. 2082862Domain d3f55a_: 3f55 A: [305351]
        automated match to d4hpga_
        complexed with cac, flc, nag
      2. 2082863Domain d3f55b_: 3f55 B: [305352]
        automated match to d4hpga_
        complexed with cac, flc, nag
      3. 2082864Domain d3f55c_: 3f55 C: [305353]
        automated match to d4hpga_
        complexed with cac, flc, nag
      4. 2082865Domain d3f55d_: 3f55 D: [305354]
        automated match to d4hpga_
        complexed with cac, flc, nag
    3. Domains for 4hpg:
      1. 2082850Domain d4hpga_: 4hpg A: [229225]
        automated match to d3em5a_
        complexed with nag, peg
      2. 2082851Domain d4hpgb_: 4hpg B: [229227]
        automated match to d3em5a_
        complexed with nag, peg
      3. 2082852Domain d4hpgc_: 4hpg C: [229228]
        automated match to d3em5a_
        complexed with nag, peg
      4. 2082853Domain d4hpgd_: 4hpg D: [229224]
        automated match to d3em5a_
        complexed with nag, peg
    4. Domains for 4iis:
      1. 2082854Domain d4iisa_: 4iis A: [229244]
        automated match to d3em5a_
        complexed with cac, flc, na
      2. 2082855Domain d4iisb_: 4iis B: [229245]
        automated match to d3em5a_
        complexed with cac, flc, na
      3. 2082856Domain d4iisc_: 4iis C: [229246]
        automated match to d3em5a_
        complexed with cac, flc, na
      4. 2082857Domain d4iisd_: 4iis D: [229243]
        automated match to d3em5a_
        complexed with cac, flc, na
  18. 2082866Soil metagenome [TaxId:410658] [236610] (2 PDB entries)
    1. Domains for 4k68:
      1. 2082869Domain d4k68a_: 4k68 A: [253160]
        automated match to d1ur2a_
        complexed with gol
      2. 2082870Domain d4k68b_: 4k68 B: [253161]
        automated match to d1ur2a_
        complexed with gol
    2. Domains for 4m1r:
      1. 2082867Domain d4m1ra_: 4m1r A: [236612]
        automated match to d1egza_
        complexed with trs
      2. 2082868Domain d4m1rb_: 4m1r B: [236611]
        automated match to d1egza_
        complexed with trs
  19. 2082871Streptomyces olivaceoviridis [TaxId:1921] [225150] (8 PDB entries)
    1. Domains for 2d1z:
      1. 2082872Domain d2d1za1: 2d1z A:1-301 [203861]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2082873Domain d2d1zb1: 2d1z B:501-801 [203863]
        Other proteins in same PDB: d2d1za2, d2d1zb2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    2. Domains for 2d20:
      1. 2082878Domain d2d20a1: 2d20 A:1-301 [203865]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
      2. 2082879Domain d2d20b1: 2d20 B:501-801 [203867]
        Other proteins in same PDB: d2d20a2, d2d20b2
        automated match to d1xyfa2
        complexed with gol, npo; mutant
    3. Domains for 2d22:
      1. 2082874Domain d2d22a1: 2d22 A:1-301 [203869]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2082875Domain d2d22b1: 2d22 B:501-801 [203871]
        Other proteins in same PDB: d2d22a2, d2d22b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    4. Domains for 2d23:
      1. 2082880Domain d2d23a1: 2d23 A:1-301 [203873]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
      2. 2082881Domain d2d23b1: 2d23 B:501-801 [203875]
        Other proteins in same PDB: d2d23a2, d2d23b2
        automated match to d1xyfa2
        complexed with gol; mutant
    5. Domains for 2d24:
      1. 2082876Domain d2d24a1: 2d24 A:1-301 [203877]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
      2. 2082877Domain d2d24b1: 2d24 B:501-801 [203879]
        Other proteins in same PDB: d2d24a2, d2d24b2
        automated match to d1xyfa2
        complexed with gol, so4; mutant
    6. Domain for 2g3i:
    7. Domain for 2g3j:
    8. Domains for 2g4f:
      1. 2082884Domain d2g4fa_: 2g4f A: [204297]
        automated match to d1e0xa_
        mutant
      2. 2082885Domain d2g4fb_: 2g4f B: [204298]
        automated match to d1e0xa_
        mutant
  20. 2082886Streptomyces thermolilacinus [TaxId:285540] [272999] (2 PDB entries)
    1. Domains for 3wsu:
      1. 2082889Domain d3wsua1: 3wsu A:53-349 [273001]
        Other proteins in same PDB: d3wsua2
        automated match to d1bqca_
        complexed with gol, na
      2. 2082890Domain d3wsub_: 3wsu B: [273000]
        Other proteins in same PDB: d3wsua2
        automated match to d1bqca_
        complexed with gol, na
    2. Domains for 4y7e:
      1. 2082887Domain d4y7ea1: 4y7e A:51-349 [277364]
        Other proteins in same PDB: d4y7ea2
        automated match to d1bqca_
        complexed with bma, ca, gol
      2. 2082888Domain d4y7eb_: 4y7e B: [277363]
        Other proteins in same PDB: d4y7ea2
        automated match to d1bqca_
        complexed with bma, ca, gol
  21. 2082891Thermoascus aurantiacus [TaxId:5087] [190006] (5 PDB entries)
    1. Domain for 1tax:
    2. Domain for 1tix:
    3. Domains for 3nyd:
      1. 2082895Domain d3nyda1: 3nyd A:1-303 [182626]
        Other proteins in same PDB: d3nyda2
        automated match to d1goka_
        complexed with 3ny, act, so4
      2. 2082896Domain d3nydb_: 3nyd B: [182627]
        Other proteins in same PDB: d3nyda2
        automated match to d1goka_
        complexed with 3ny, act, so4
    4. Domain for 3o2l:
    5. Domains for 4bs0:
      1. 2082892Domain d4bs0a_: 4bs0 A: [228291]
        automated match to d1goka_
        complexed with 6nt, so4
      2. 2082893Domain d4bs0b_: 4bs0 B: [234278]
        automated match to d4bs0a_
        complexed with 6nt, so4
  22. 2082899Thermotoga petrophila [TaxId:390874] [189941] (2 PDB entries)
    1. Domains for 3niy:
      1. 2082900Domain d3niya1: 3niy A:18-341 [182330]
        Other proteins in same PDB: d3niya2, d3niyb2
        automated match to d1vbra1
        complexed with act, so4
      2. 2082901Domain d3niyb1: 3niy B:18-341 [182331]
        Other proteins in same PDB: d3niya2, d3niyb2
        automated match to d1vbra1
        complexed with act, so4
    2. Domains for 3nj3:
      1. 2082902Domain d3nj3a1: 3nj3 A:18-341 [182333]
        Other proteins in same PDB: d3nj3a2, d3nj3b2
        automated match to d1vbra1
        complexed with act, so4, xyp
      2. 2082903Domain d3nj3b1: 3nj3 B:18-341 [182334]
        Other proteins in same PDB: d3nj3a2, d3nj3b2
        automated match to d1vbra1
        complexed with act, so4, xyp
  23. 2082904Yeast (Candida albicans) [TaxId:5476] [188406] (8 PDB entries)
    1. Domain for 2pbo:
    2. Domain for 2pc8:
    3. Domain for 2pf0:
    4. Domain for 3n9k:
    5. Domain for 3o6a:
    6. Domain for 4m80:
    7. Domain for 4m81:
    8. Domain for 4m82:
  24. 2268447Geobacillus sp. [TaxId:575526] [311753] (1 PDB entry)
  25. 2268882Bacillus sp. [TaxId:253629] [312188] (1 PDB entry)
  26. 2287033Talaromyces verruculosus [TaxId:198730] [330334] (1 PDB entry)

More info for Protein automated matches from c.1.8.3: beta-glycanases

Timeline for Protein automated matches from c.1.8.3: beta-glycanases: