Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2048292Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 2048293Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 2048294Family b.36.1.1: PDZ domain [50157] (47 protein domains)
    Pfam PF00595
  6. 2048590Protein automated matches [190055] (7 species)
    not a true protein

Species:

  1. 2048591African clawed frog (Xenopus laevis) [TaxId:8355] [187076] (1 PDB entry)
  2. 2048594Fruit fly (Drosophila melanogaster) [TaxId:7227] [255425] (2 PDB entries)
    1. Domain for 2lc6:
    2. Domain for 2lc7:
  3. 2048597Homo sapiens, influenza a virus [TaxId:9606] [193650] (1 PDB entry)
  4. 2048599Human (Homo sapiens) [TaxId:9606] [187785] (40 PDB entries)
    1. Domain for 2eeg:
    2. Domain for 2ejy:
    3. Domain for 2ev8:
    4. Domain for 2exg:
    5. Domain for 2h2b:
    6. Domain for 2h2c:
    7. Domain for 2h3m:
    8. Domains for 2he2:
      1. 2048606Domain d2he2a1: 2he2 A:418-513 [204544]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
      2. 2048607Domain d2he2b1: 2he2 B:418-513 [204545]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
    9. Domain for 2he4:
    10. Domain for 2iwq:
    11. Domain for 2jxo:
    12. Domain for 2kbs:
    13. Domain for 2kpk:
    14. Domain for 2kpl:
    15. Domain for 2m3m:
    16. Domain for 2ocs:
    17. Domain for 2ozf:
    18. Domain for 2pa1:
    19. Domain for 2pkt:
    20. Domains for 2vph:
      1. 2048623Domain d2vpha_: 2vph A: [168757]
        automated match to d2cs5a1
      2. 2048624Domain d2vphb_: 2vph B: [168758]
        automated match to d2cs5a1
    21. Domains for 2vrf:
      1. 2048625Domain d2vrfa1: 2vrf A:112-200 [168768]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      2. 2048626Domain d2vrfb1: 2vrf B:112-200 [168769]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      3. 2048627Domain d2vrfc1: 2vrf C:112-200 [168770]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      4. 2048628Domain d2vrfd1: 2vrf D:112-200 [168771]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
    22. Domain for 2w4f:
    23. Domain for 2x7z:
    24. Domain for 2yt7:
    25. Domain for 2yt8:
    26. Domains for 3i4w:
      1. 2048611Domain d3i4wa_: 3i4w A: [178090]
        automated match to d1tp3a1
        complexed with act
      2. 2048612Domain d3i4wb_: 3i4w B: [178091]
        automated match to d1tp3a1
        complexed with act
      3. 2048613Domain d3i4wc_: 3i4w C: [178092]
        automated match to d1tp3a1
        complexed with act
      4. 2048614Domain d3i4wd_: 3i4w D: [178093]
        automated match to d1tp3a1
        complexed with act
    27. Domain for 3k82:
    28. Domains for 3rl7:
      1. 2048641Domain d3rl7a_: 3rl7 A: [185006]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      2. 2048642Domain d3rl7b1: 3rl7 B:220-310 [185007]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      3. 2048643Domain d3rl7c_: 3rl7 C: [185008]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      4. 2048644Domain d3rl7d1: 3rl7 D:220-310 [185009]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      5. 2048645Domain d3rl7e_: 3rl7 E: [185010]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      6. 2048646Domain d3rl7f1: 3rl7 F:220-309 [185011]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
    29. Domains for 3rl8:
      1. 2048636Domain d3rl8a_: 3rl8 A: [185012]
        automated match to d1qlca_
      2. 2048637Domain d3rl8b_: 3rl8 B: [185013]
        automated match to d1qlca_
      3. 2048638Domain d3rl8c_: 3rl8 C: [185014]
        automated match to d1qlca_
      4. 2048639Domain d3rl8d_: 3rl8 D: [185015]
        automated match to d1qlca_
      5. 2048640Domain d3rl8e_: 3rl8 E: [185016]
        automated match to d1qlca_
    30. Domain for 4jl7:
    31. Domain for 4lmm:
    32. Domain for 4mpa:
    33. Domain for 4n6x:
    34. Domains for 4oeo:
      1. 2048633Domain d4oeoa1: 4oeo A:18-110 [268492]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      2. 2048634Domain d4oeob1: 4oeo B:18-110 [268495]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      3. 2048635Domain d4oeoc1: 4oeo C:18-110 [268496]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
    35. Domains for 4oep:
      1. 2048653Domain d4oepa1: 4oep A:18-110 [268502]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
      2. 2048654Domain d4oepb1: 4oep B:18-110 [268514]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
    36. Domain for 4p0c:
    37. Domain for 4pqw:
    38. Domains for 4q2o:
      1. 2048647Domain d4q2oa_: 4q2o A: [259471]
        automated match to d2eega_
      2. 2048648Domain d4q2ob_: 4q2o B: [259472]
        automated match to d2eega_
      3. 2048649Domain d4q2oc_: 4q2o C: [263610]
        automated match to d4q2oa_
      4. 2048650Domain d4q2od_: 4q2o D: [261254]
        automated match to d2eega_
      5. 2048651Domain d4q2oe_: 4q2o E: [263611]
        automated match to d4q2oa_
      6. 2048652Domain d4q2of_: 4q2o F: [263612]
        automated match to d4q2oa_
    39. Domains for 4q3h:
      1. 2048617Domain d4q3ha_: 4q3h A: [257610]
        automated match to d2ozfa_
      2. 2048618Domain d4q3hb_: 4q3h B: [263629]
        automated match to d2ozfa_
    40. Domains for 4yyx:
      1. 2048631Domain d4yyxa1: 4yyx A:18-120 [271160]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
      2. 2048632Domain d4yyxb1: 4yyx B:18-120 [271161]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
  5. 2048667Mouse (Mus musculus) [TaxId:10090] [189198] (6 PDB entries)
    1. Domain for 1z86:
    2. Domain for 2kaw:
    3. Domain for 2rrm:
    4. Domain for 2wl7:
    5. Domains for 3axa:
      1. 2048677Domain d3axaa_: 3axa A: [231813]
        automated match to d3axab_
      2. 2048678Domain d3axab_: 3axa B: [195552]
        automated match to d1xz9a1
    6. Domains for 3o5n:
      1. 2048669Domain d3o5na_: 3o5n A: [182807]
        automated match to d1q3ob_
        complexed with br0
      2. 2048670Domain d3o5nb_: 3o5n B: [182808]
        automated match to d1q3ob_
        complexed with br0
      3. 2048671Domain d3o5nc_: 3o5n C: [182809]
        automated match to d1q3ob_
        complexed with br0
      4. 2048672Domain d3o5nd_: 3o5n D: [182810]
        automated match to d1q3ob_
        complexed with br0
      5. 2048673Domain d3o5ne_: 3o5n E: [182811]
        automated match to d1q3ob_
        complexed with br0
      6. 2048674Domain d3o5nf_: 3o5n F: [182812]
        automated match to d1q3ob_
        complexed with br0
      7. 2048675Domain d3o5ng_: 3o5n G: [182813]
        automated match to d1q3ob_
        complexed with br0
      8. 2048676Domain d3o5nh_: 3o5n H: [182814]
        automated match to d1q3ob_
        complexed with br0
  6. 2048682Norway rat (Rattus norvegicus) [TaxId:10116] [186775] (9 PDB entries)
    1. Domain for 1tp5:
    2. Domains for 2awu:
      1. 2048692Domain d2awua_: 2awu A: [162931]
        automated match to d1qlca_
      2. 2048693Domain d2awub_: 2awu B: [162932]
        automated match to d1qlca_
    3. Domains for 2aww:
      1. 2048694Domain d2awwa_: 2aww A: [162933]
        automated match to d1qlca_
      2. 2048695Domain d2awwb_: 2aww B: [162934]
        automated match to d1qlca_
    4. Domains for 2awx:
      1. 2048686Domain d2awxa_: 2awx A: [162935]
        automated match to d1qlca_
        complexed with his
      2. 2048687Domain d2awxb_: 2awx B: [162936]
        automated match to d1qlca_
        complexed with his
    5. Domain for 2fn5:
    6. Domains for 2g2l:
      1. 2048696Domain d2g2la_: 2g2l A: [164562]
        automated match to d1qlca_
      2. 2048697Domain d2g2lb_: 2g2l B: [164563]
        automated match to d1qlca_
    7. Domains for 2i0l:
      1. 2048698Domain d2i0la_: 2i0l A: [165356]
        automated match to d1qlca_
      2. 2048699Domain d2i0lb_: 2i0l B: [165357]
        automated match to d1qlca_
    8. Domains for 3gsl:
      1. 2048688Domain d3gsla1: 3gsl A:61-153 [246353]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      2. 2048689Domain d3gsla2: 3gsl A:154-253 [246354]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      3. 2048690Domain d3gslb1: 3gsl B:61-153 [246355]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      4. 2048691Domain d3gslb2: 3gsl B:154-253 [246356]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
    9. Domains for 4h11:
      1. 2048684Domain d4h11a1: 4h11 A:93-188 [202347]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d4h11b_
        complexed with act, so4
      2. 2048685Domain d4h11b1: 4h11 B:93-188 [196742]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d2wl7a_
        complexed with act, so4
  7. 2283113Homo sapiens [TaxId:9606] [326414] (1 PDB entry)

More info for Protein automated matches from b.36.1.1: PDZ domain

Timeline for Protein automated matches from b.36.1.1: PDZ domain: