SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2048292Fold b.36: PDZ domain-like [50155] (1 superfamily)
    contains barrel, partly opened; n*=4, S*=8; meander; capped by alpha-helix
  4. 2048293Superfamily b.36.1: PDZ domain-like [50156] (7 families) (S)
    peptide-binding domain
  5. 2048294Family b.36.1.1: PDZ domain [50157] (47 protein domains)
    Pfam PF00595
  6. 2048590Protein automated matches [190055] (7 species)
    not a true protein

Species:

  1. 2048591African clawed frog (Xenopus laevis) [TaxId:8355] [187076] (1 PDB entry)
  2. 2048594Fruit fly (Drosophila melanogaster) [TaxId:7227] [255425] (2 PDB entries)
    1. Domain for 2lc6:
    2. Domain for 2lc7:
  3. 2048597Homo sapiens, influenza a virus [TaxId:9606] [193650] (1 PDB entry)
  4. 2048599Human (Homo sapiens) [TaxId:9606] [187785] (40 PDB entries)
    1. Domain for 2eeg:
    2. Domain for 2ejy:
    3. Domain for 2ev8:
    4. Domain for 2exg:
    5. Domain for 2h2b:
    6. Domain for 2h2c:
    7. Domain for 2h3m:
    8. Domains for 2he2:
      1. 2048606Domain d2he2a1: 2he2 A:418-513 [204544]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
      2. 2048607Domain d2he2b1: 2he2 B:418-513 [204545]
        Other proteins in same PDB: d2he2a2, d2he2a3, d2he2b2, d2he2b3
        automated match to d1pdra_
    9. Domain for 2he4:
    10. Domain for 2iwq:
    11. Domain for 2jxo:
    12. Domain for 2kbs:
    13. Domain for 2kpk:
    14. Domain for 2kpl:
    15. Domain for 2m3m:
    16. Domain for 2ocs:
    17. Domain for 2ozf:
    18. Domain for 2pa1:
    19. Domain for 2pkt:
    20. Domains for 2vph:
      1. 2048623Domain d2vpha_: 2vph A: [168757]
        automated match to d2cs5a1
      2. 2048624Domain d2vphb_: 2vph B: [168758]
        automated match to d2cs5a1
    21. Domains for 2vrf:
      1. 2048625Domain d2vrfa1: 2vrf A:112-200 [168768]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      2. 2048626Domain d2vrfb1: 2vrf B:112-200 [168769]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      3. 2048627Domain d2vrfc1: 2vrf C:112-200 [168770]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
      4. 2048628Domain d2vrfd1: 2vrf D:112-200 [168771]
        Other proteins in same PDB: d2vrfa2, d2vrfa3, d2vrfb2, d2vrfb3, d2vrfc2, d2vrfc3, d2vrfd2, d2vrfd3
        automated match to d1qava_
        complexed with edo
    22. Domain for 2w4f:
    23. Domain for 2x7z:
    24. Domain for 2yt7:
    25. Domain for 2yt8:
    26. Domains for 3i4w:
      1. 2048611Domain d3i4wa_: 3i4w A: [178090]
        automated match to d1tp3a1
        complexed with act
      2. 2048612Domain d3i4wb_: 3i4w B: [178091]
        automated match to d1tp3a1
        complexed with act
      3. 2048613Domain d3i4wc_: 3i4w C: [178092]
        automated match to d1tp3a1
        complexed with act
      4. 2048614Domain d3i4wd_: 3i4w D: [178093]
        automated match to d1tp3a1
        complexed with act
    27. Domain for 3k82:
    28. Domains for 3rl7:
      1. 2048641Domain d3rl7a_: 3rl7 A: [185006]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      2. 2048642Domain d3rl7b1: 3rl7 B:220-310 [185007]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      3. 2048643Domain d3rl7c_: 3rl7 C: [185008]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      4. 2048644Domain d3rl7d1: 3rl7 D:220-310 [185009]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      5. 2048645Domain d3rl7e_: 3rl7 E: [185010]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
      6. 2048646Domain d3rl7f1: 3rl7 F:220-309 [185011]
        Other proteins in same PDB: d3rl7b2, d3rl7d2, d3rl7f2
        automated match to d1zoka1
    29. Domains for 3rl8:
      1. 2048636Domain d3rl8a_: 3rl8 A: [185012]
        automated match to d1qlca_
      2. 2048637Domain d3rl8b_: 3rl8 B: [185013]
        automated match to d1qlca_
      3. 2048638Domain d3rl8c_: 3rl8 C: [185014]
        automated match to d1qlca_
      4. 2048639Domain d3rl8d_: 3rl8 D: [185015]
        automated match to d1qlca_
      5. 2048640Domain d3rl8e_: 3rl8 E: [185016]
        automated match to d1qlca_
    30. Domain for 4jl7:
    31. Domain for 4lmm:
    32. Domain for 4mpa:
    33. Domain for 4n6x:
    34. Domains for 4oeo:
      1. 2048633Domain d4oeoa1: 4oeo A:18-110 [268492]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      2. 2048634Domain d4oeob1: 4oeo B:18-110 [268495]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
      3. 2048635Domain d4oeoc1: 4oeo C:18-110 [268496]
        Other proteins in same PDB: d4oeoa2, d4oeob2, d4oeoc2
        automated match to d2h2ba_
        complexed with 12p, act, so4
    35. Domains for 4oep:
      1. 2048653Domain d4oepa1: 4oep A:18-110 [268502]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
      2. 2048654Domain d4oepb1: 4oep B:18-110 [268514]
        Other proteins in same PDB: d4oepa2, d4oepa3, d4oepb2, d4oepb3
        automated match to d2rrma_
        complexed with 12p, act
    36. Domain for 4p0c:
    37. Domain for 4pqw:
    38. Domains for 4q2o:
      1. 2048647Domain d4q2oa_: 4q2o A: [259471]
        automated match to d2eega_
      2. 2048648Domain d4q2ob_: 4q2o B: [259472]
        automated match to d2eega_
      3. 2048649Domain d4q2oc_: 4q2o C: [263610]
        automated match to d4q2oa_
      4. 2048650Domain d4q2od_: 4q2o D: [261254]
        automated match to d2eega_
      5. 2048651Domain d4q2oe_: 4q2o E: [263611]
        automated match to d4q2oa_
      6. 2048652Domain d4q2of_: 4q2o F: [263612]
        automated match to d4q2oa_
    39. Domains for 4q3h:
      1. 2048617Domain d4q3ha_: 4q3h A: [257610]
        automated match to d2ozfa_
      2. 2048618Domain d4q3hb_: 4q3h B: [263629]
        automated match to d2ozfa_
    40. Domains for 4yyx:
      1. 2048631Domain d4yyxa1: 4yyx A:18-120 [271160]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
      2. 2048632Domain d4yyxb1: 4yyx B:18-120 [271161]
        Other proteins in same PDB: d4yyxa2, d4yyxb2
        automated match to d2h2ba_
        complexed with fmt
  5. 2048667Mouse (Mus musculus) [TaxId:10090] [189198] (6 PDB entries)
    1. Domain for 1z86:
    2. Domain for 2kaw:
    3. Domain for 2rrm:
    4. Domain for 2wl7:
    5. Domains for 3axa:
      1. 2048677Domain d3axaa_: 3axa A: [231813]
        automated match to d3axab_
      2. 2048678Domain d3axab_: 3axa B: [195552]
        automated match to d1xz9a1
    6. Domains for 3o5n:
      1. 2048669Domain d3o5na_: 3o5n A: [182807]
        automated match to d1q3ob_
        complexed with br0
      2. 2048670Domain d3o5nb_: 3o5n B: [182808]
        automated match to d1q3ob_
        complexed with br0
      3. 2048671Domain d3o5nc_: 3o5n C: [182809]
        automated match to d1q3ob_
        complexed with br0
      4. 2048672Domain d3o5nd_: 3o5n D: [182810]
        automated match to d1q3ob_
        complexed with br0
      5. 2048673Domain d3o5ne_: 3o5n E: [182811]
        automated match to d1q3ob_
        complexed with br0
      6. 2048674Domain d3o5nf_: 3o5n F: [182812]
        automated match to d1q3ob_
        complexed with br0
      7. 2048675Domain d3o5ng_: 3o5n G: [182813]
        automated match to d1q3ob_
        complexed with br0
      8. 2048676Domain d3o5nh_: 3o5n H: [182814]
        automated match to d1q3ob_
        complexed with br0
  6. 2048682Norway rat (Rattus norvegicus) [TaxId:10116] [186775] (9 PDB entries)
    1. Domain for 1tp5:
    2. Domains for 2awu:
      1. 2048692Domain d2awua_: 2awu A: [162931]
        automated match to d1qlca_
      2. 2048693Domain d2awub_: 2awu B: [162932]
        automated match to d1qlca_
    3. Domains for 2aww:
      1. 2048694Domain d2awwa_: 2aww A: [162933]
        automated match to d1qlca_
      2. 2048695Domain d2awwb_: 2aww B: [162934]
        automated match to d1qlca_
    4. Domains for 2awx:
      1. 2048686Domain d2awxa_: 2awx A: [162935]
        automated match to d1qlca_
        complexed with his
      2. 2048687Domain d2awxb_: 2awx B: [162936]
        automated match to d1qlca_
        complexed with his
    5. Domain for 2fn5:
    6. Domains for 2g2l:
      1. 2048696Domain d2g2la_: 2g2l A: [164562]
        automated match to d1qlca_
      2. 2048697Domain d2g2lb_: 2g2l B: [164563]
        automated match to d1qlca_
    7. Domains for 2i0l:
      1. 2048698Domain d2i0la_: 2i0l A: [165356]
        automated match to d1qlca_
      2. 2048699Domain d2i0lb_: 2i0l B: [165357]
        automated match to d1qlca_
    8. Domains for 3gsl:
      1. 2048688Domain d3gsla1: 3gsl A:61-153 [246353]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      2. 2048689Domain d3gsla2: 3gsl A:154-253 [246354]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      3. 2048690Domain d3gslb1: 3gsl B:61-153 [246355]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
      4. 2048691Domain d3gslb2: 3gsl B:154-253 [246356]
        Other proteins in same PDB: d3gsla3
        automated match to d4h11a_
    9. Domains for 4h11:
      1. 2048684Domain d4h11a1: 4h11 A:93-188 [202347]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d4h11b_
        complexed with act, so4
      2. 2048685Domain d4h11b1: 4h11 B:93-188 [196742]
        Other proteins in same PDB: d4h11a2, d4h11a3, d4h11b2, d4h11b3
        automated match to d2wl7a_
        complexed with act, so4
  7. 2283113Homo sapiens [TaxId:9606] [326414] (1 PDB entry)

More info for Protein automated matches from b.36.1.1: PDZ domain

Timeline for Protein automated matches from b.36.1.1: PDZ domain: