Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2156898Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2156899Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2156900Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 proteins)
  6. 2157154Protein automated matches [190054] (13 species)
    not a true protein

Species:

  1. 2157155Aeropyrum pernix [TaxId:272557] [195353] (3 PDB entries)
    1. Domains for 3vsa:
      1. 2157156Domain d3vsaa_: 3vsa A: [195359]
        automated match to d1wkvb_
        complexed with mpd, plp
      2. 2157157Domain d3vsab_: 3vsa B: [195358]
        automated match to d1wkvb_
        complexed with mpd, plp
    2. Domains for 3vsc:
      1. 2157158Domain d3vsca_: 3vsc A: [195356]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
      2. 2157159Domain d3vscb_: 3vsc B: [195355]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
    3. Domains for 3vsd:
      1. 2157160Domain d3vsda_: 3vsd A: [195357]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
      2. 2157161Domain d3vsdb_: 3vsd B: [195354]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
  2. 2157162Escherichia coli [TaxId:562] [187621] (3 PDB entries)
    1. Domain for 2dh5:
    2. Domain for 2dh6:
    3. Domain for 2v03:
  3. 2157166Escherichia coli [TaxId:83334] [320059] (2 PDB entries)
    1. Domains for 5j43:
      1. 2157167Domain d5j43a_: 5j43 A: [320077]
        automated match to d1d6sa_
      2. 2157168Domain d5j43e_: 5j43 E: [320240]
        automated match to d1d6sa_
    2. Domains for 5j5v:
      1. 2157169Domain d5j5va_: 5j5v A: [320060]
        automated match to d1d6sa_
      2. 2157170Domain d5j5vd_: 5j5v D: [320085]
        automated match to d1d6sa_
  4. 2157171Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188093] (3 PDB entries)
    1. Domain for 1wtc:
    2. Domain for 2zpu:
    3. Domain for 2zr8:
  5. 2157175Francisella tularensis [TaxId:177416] [321163] (1 PDB entry)
  6. 2157177Haemophilus influenzae [TaxId:727] [189119] (3 PDB entries)
    1. Domain for 3iqg:
    2. Domain for 3iqh:
    3. Domain for 3iqi:
  7. 2157181Human (Homo sapiens) [TaxId:9606] [256281] (1 PDB entry)
  8. 2157183Pyrococcus furiosus [TaxId:186497] [279274] (6 PDB entries)
    1. Domains for 5dvz:
      1. 2157192Domain d5dvza_: 5dvz A: [313790]
        automated match to d5dw0a_
        complexed with na, po4
      2. 2157193Domain d5dvzb_: 5dvz B: [313796]
        automated match to d5dw0a_
        complexed with na, po4
      3. 2157194Domain d5dvzc_: 5dvz C: [313582]
        automated match to d5dw0a_
        complexed with na, po4
      4. 2157195Domain d5dvzd_: 5dvz D: [313513]
        automated match to d5dw0a_
        complexed with na, po4
    2. Domains for 5dw0:
      1. 2157200Domain d5dw0a_: 5dw0 A: [279280]
        automated match to d1v8zb_
        complexed with na, pls
      2. 2157201Domain d5dw0b_: 5dw0 B: [279278]
        automated match to d1v8zb_
        complexed with na, pls
      3. 2157202Domain d5dw0c_: 5dw0 C: [279281]
        automated match to d1v8zb_
        complexed with na, pls
      4. 2157203Domain d5dw0d_: 5dw0 D: [279282]
        automated match to d1v8zb_
        complexed with na, pls
    3. Domains for 5dw3:
      1. 2157196Domain d5dw3a_: 5dw3 A: [279275]
        automated match to d1v8zb_
        complexed with na, po4, trp
      2. 2157197Domain d5dw3b_: 5dw3 B: [279279]
        automated match to d1v8zb_
        complexed with na, po4, trp
      3. 2157198Domain d5dw3c_: 5dw3 C: [279276]
        automated match to d1v8zb_
        complexed with na, po4, trp
      4. 2157199Domain d5dw3d_: 5dw3 D: [279277]
        automated match to d1v8zb_
        complexed with na, po4, trp
    4. Domains for 5e0k:
      1. 2157204Domain d5e0kb_: 5e0k B: [279283]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      2. 2157205Domain d5e0kd_: 5e0k D: [279284]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      3. 2157206Domain d5e0kf_: 5e0k F: [279287]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      4. 2157207Domain d5e0kh_: 5e0k H: [279290]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      5. 2157208Domain d5e0kj_: 5e0k J: [279292]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      6. 2157209Domain d5e0kl_: 5e0k L: [279291]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
    5. Domains for 5ixj:
      1. 2157184Domain d5ixja_: 5ixj A: [321510]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      2. 2157185Domain d5ixjb1: 5ixj B:1-388 [321325]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      3. 2157186Domain d5ixjc_: 5ixj C: [321349]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      4. 2157187Domain d5ixjd1: 5ixj D:1-388 [321422]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
    6. Domains for 5vm5:
      1. 2157188Domain d5vm5a_: 5vm5 A: [334719]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      2. 2157189Domain d5vm5b_: 5vm5 B: [334685]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      3. 2157190Domain d5vm5c_: 5vm5 C: [334704]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      4. 2157191Domain d5vm5d_: 5vm5 D: [334814]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
  9. 2157210Pyrococcus furiosus [TaxId:2261] [327480] (1 PDB entry)
  10. 2157215Salmonella typhimurium [TaxId:90371] [189633] (13 PDB entries)
    1. Domain for 1tjp:
    2. Domain for 1wbj:
    3. Domain for 2clf:
    4. Domain for 2cli:
    5. Domain for 2clk:
    6. Domain for 2cll:
    7. Domain for 2clm:
    8. Domain for 2clo:
    9. Domain for 2j9x:
    10. Domain for 2j9y:
    11. Domain for 2j9z:
    12. Domains for 2jc3:
      1. 2157228Domain d2jc3a_: 2jc3 A: [165995]
        automated match to d2bhsa1
        complexed with plp
      2. 2157229Domain d2jc3b_: 2jc3 B: [165996]
        automated match to d2bhsa1
        complexed with plp
      3. 2157230Domain d2jc3c_: 2jc3 C: [165997]
        automated match to d2bhsa1
        complexed with plp
      4. 2157231Domain d2jc3d_: 2jc3 D: [165998]
        automated match to d2bhsa1
        complexed with plp
      5. 2157232Domain d2jc3e_: 2jc3 E: [165999]
        automated match to d2bhsa1
        complexed with plp
      6. 2157233Domain d2jc3f_: 2jc3 F: [166000]
        automated match to d2bhsa1
        complexed with plp
      7. 2157234Domain d2jc3g_: 2jc3 G: [166001]
        automated match to d2bhsa1
        complexed with plp
      8. 2157235Domain d2jc3h_: 2jc3 H: [166002]
        automated match to d2bhsa1
        complexed with plp
    13. Domain for 2rh9:
  11. 2157236Thale cress (Arabidopsis thaliana) [TaxId:3702] [187877] (1 PDB entry)
  12. 2157238Thermus thermophilus HB8 [TaxId:300852] [187272] (5 PDB entries)
    1. Domains for 1ve5:
      1. 2157241Domain d1ve5b_: 1ve5 B: [120014]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      2. 2157242Domain d1ve5c_: 1ve5 C: [120015]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      3. 2157243Domain d1ve5d_: 1ve5 D: [120016]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
    2. Domains for 1x1q:
      1. 2157246Domain d1x1qa_: 1x1q A: [240939]
        automated match to d1v8za1
        complexed with cl
      2. 2157247Domain d1x1qb_: 1x1q B: [240940]
        automated match to d1v8za1
        complexed with cl
    3. Domain for 2eco:
    4. Domain for 2ecq:
    5. Domains for 2efy:
      1. 2157244Domain d2efya_: 2efy A: [146824]
        automated match to d1ve1a1
        complexed with 4at, plp
      2. 2157245Domain d2efyb_: 2efy B: [146825]
        automated match to d1ve1a1
        complexed with 4at, plp
  13. 2157248Thermus thermophilus [TaxId:274] [188788] (1 PDB entry)

More info for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Timeline for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes: