SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2139769Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2139770Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2139771Family c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53687] (9 protein domains)
  6. 2140010Protein automated matches [190054] (13 species)
    not a true protein

Species:

  1. 2140011Aeropyrum pernix [TaxId:272557] [195353] (3 PDB entries)
    1. Domains for 3vsa:
      1. 2140012Domain d3vsaa_: 3vsa A: [195359]
        automated match to d1wkvb_
        complexed with mpd, plp
      2. 2140013Domain d3vsab_: 3vsa B: [195358]
        automated match to d1wkvb_
        complexed with mpd, plp
    2. Domains for 3vsc:
      1. 2140014Domain d3vsca_: 3vsc A: [195356]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
      2. 2140015Domain d3vscb_: 3vsc B: [195355]
        automated match to d1wkvb_
        complexed with mpd, plp, sep; mutant
    3. Domains for 3vsd:
      1. 2140016Domain d3vsda_: 3vsd A: [195357]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
      2. 2140017Domain d3vsdb_: 3vsd B: [195354]
        automated match to d1wkvb_
        complexed with mpd, oas, plp; mutant
  2. 2140018Escherichia coli [TaxId:562] [187621] (3 PDB entries)
    1. Domain for 2dh5:
    2. Domain for 2dh6:
    3. Domain for 2v03:
  3. 2140022Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [188093] (3 PDB entries)
    1. Domain for 1wtc:
    2. Domain for 2zpu:
    3. Domain for 2zr8:
  4. 2140026Haemophilus influenzae [TaxId:727] [189119] (3 PDB entries)
    1. Domain for 3iqg:
    2. Domain for 3iqh:
    3. Domain for 3iqi:
  5. 2140030Human (Homo sapiens) [TaxId:9606] [256281] (1 PDB entry)
  6. 2140032Pyrococcus furiosus [TaxId:186497] [279274] (6 PDB entries)
    1. Domains for 5dvz:
      1. 2270208Domain d5dvzd_: 5dvz D: [313513]
        automated match to d5dw0a_
        complexed with na, po4
      2. 2270277Domain d5dvzc_: 5dvz C: [313582]
        automated match to d5dw0a_
        complexed with na, po4
      3. 2270485Domain d5dvza_: 5dvz A: [313790]
        automated match to d5dw0a_
        complexed with na, po4
      4. 2270491Domain d5dvzb_: 5dvz B: [313796]
        automated match to d5dw0a_
        complexed with na, po4
    2. Domains for 5dw0:
      1. 2140037Domain d5dw0a_: 5dw0 A: [279280]
        automated match to d1v8zb_
        complexed with na, pls
      2. 2140038Domain d5dw0b_: 5dw0 B: [279278]
        automated match to d1v8zb_
        complexed with na, pls
      3. 2140039Domain d5dw0c_: 5dw0 C: [279281]
        automated match to d1v8zb_
        complexed with na, pls
      4. 2140040Domain d5dw0d_: 5dw0 D: [279282]
        automated match to d1v8zb_
        complexed with na, pls
    3. Domains for 5dw3:
      1. 2140033Domain d5dw3a_: 5dw3 A: [279275]
        automated match to d1v8zb_
        complexed with na, po4, trp
      2. 2140034Domain d5dw3b_: 5dw3 B: [279279]
        automated match to d1v8zb_
        complexed with na, po4, trp
      3. 2140035Domain d5dw3c_: 5dw3 C: [279276]
        automated match to d1v8zb_
        complexed with na, po4, trp
      4. 2140036Domain d5dw3d_: 5dw3 D: [279277]
        automated match to d1v8zb_
        complexed with na, po4, trp
    4. Domains for 5e0k:
      1. 2140041Domain d5e0kb_: 5e0k B: [279283]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      2. 2140042Domain d5e0kd_: 5e0k D: [279284]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      3. 2140043Domain d5e0kf_: 5e0k F: [279287]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      4. 2140044Domain d5e0kh_: 5e0k H: [279290]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      5. 2140045Domain d5e0kj_: 5e0k J: [279292]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
      6. 2140046Domain d5e0kl_: 5e0k L: [279291]
        Other proteins in same PDB: d5e0ka_, d5e0kc_, d5e0ke_, d5e0kg_, d5e0ki_, d5e0kk_
        automated match to d1v8zb_
        complexed with po4
    5. Domains for 5ixj:
      1. 2278024Domain d5ixjb1: 5ixj B:1-388 [321325]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      2. 2278048Domain d5ixjc_: 5ixj C: [321349]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      3. 2278121Domain d5ixjd1: 5ixj D:1-388 [321422]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
      4. 2278209Domain d5ixja_: 5ixj A: [321510]
        Other proteins in same PDB: d5ixjb2, d5ixjd2
        automated match to d1v8zb_
        complexed with na, thr
    6. Domains for 5vm5:
      1. 2291384Domain d5vm5b_: 5vm5 B: [334685]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      2. 2291403Domain d5vm5c_: 5vm5 C: [334704]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      3. 2291418Domain d5vm5a_: 5vm5 A: [334719]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
      4. 2291513Domain d5vm5d_: 5vm5 D: [334814]
        automated match to d5dw0a_
        complexed with 0jo, na, pls
  7. 2140047Salmonella typhimurium [TaxId:90371] [189633] (13 PDB entries)
    1. Domain for 1tjp:
    2. Domain for 1wbj:
    3. Domain for 2clf:
    4. Domain for 2cli:
    5. Domain for 2clk:
    6. Domain for 2cll:
    7. Domain for 2clm:
    8. Domain for 2clo:
    9. Domain for 2j9x:
    10. Domain for 2j9y:
    11. Domain for 2j9z:
    12. Domains for 2jc3:
      1. 2140060Domain d2jc3a_: 2jc3 A: [165995]
        automated match to d2bhsa1
        complexed with plp
      2. 2140061Domain d2jc3b_: 2jc3 B: [165996]
        automated match to d2bhsa1
        complexed with plp
      3. 2140062Domain d2jc3c_: 2jc3 C: [165997]
        automated match to d2bhsa1
        complexed with plp
      4. 2140063Domain d2jc3d_: 2jc3 D: [165998]
        automated match to d2bhsa1
        complexed with plp
      5. 2140064Domain d2jc3e_: 2jc3 E: [165999]
        automated match to d2bhsa1
        complexed with plp
      6. 2140065Domain d2jc3f_: 2jc3 F: [166000]
        automated match to d2bhsa1
        complexed with plp
      7. 2140066Domain d2jc3g_: 2jc3 G: [166001]
        automated match to d2bhsa1
        complexed with plp
      8. 2140067Domain d2jc3h_: 2jc3 H: [166002]
        automated match to d2bhsa1
        complexed with plp
    13. Domain for 2rh9:
  8. 2140068Thale cress (Arabidopsis thaliana) [TaxId:3702] [187877] (1 PDB entry)
  9. 2140070Thermus thermophilus HB8 [TaxId:300852] [187272] (5 PDB entries)
    1. Domains for 1ve5:
      1. 2140073Domain d1ve5b_: 1ve5 B: [120014]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      2. 2140074Domain d1ve5c_: 1ve5 C: [120015]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
      3. 2140075Domain d1ve5d_: 1ve5 D: [120016]
        Other proteins in same PDB: d1ve5a1
        automated match to d1ve5a1
        complexed with ca, plp
    2. Domains for 1x1q:
      1. 2140078Domain d1x1qa_: 1x1q A: [240939]
        automated match to d1v8za1
        complexed with cl
      2. 2140079Domain d1x1qb_: 1x1q B: [240940]
        automated match to d1v8za1
        complexed with cl
    3. Domain for 2eco:
    4. Domain for 2ecq:
    5. Domains for 2efy:
      1. 2140076Domain d2efya_: 2efy A: [146824]
        automated match to d1ve1a1
        complexed with 4at, plp
      2. 2140077Domain d2efyb_: 2efy B: [146825]
        automated match to d1ve1a1
        complexed with 4at, plp
  10. 2140080Thermus thermophilus [TaxId:274] [188788] (1 PDB entry)
  11. 2276758Escherichia coli [TaxId:83334] [320059] (2 PDB entries)
    1. Domains for 5j43:
      1. 2276776Domain d5j43a_: 5j43 A: [320077]
        automated match to d1d6sa_
      2. 2276939Domain d5j43e_: 5j43 E: [320240]
        automated match to d1d6sa_
    2. Domains for 5j5v:
      1. 2276759Domain d5j5va_: 5j5v A: [320060]
        automated match to d1d6sa_
      2. 2276784Domain d5j5vd_: 5j5v D: [320085]
        automated match to d1d6sa_
  12. 2277862Francisella tularensis [TaxId:177416] [321163] (1 PDB entry)
  13. 2284179Pyrococcus furiosus [TaxId:2261] [327480] (1 PDB entry)

More info for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes

Timeline for Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes:

  • Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes first appeared in SCOPe 2.01
  • Protein automated matches from c.79.1.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes appears in SCOPe 2.05