Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1798838Fold b.55: PH domain-like barrel [50728] (2 superfamilies)
    barrel, partly opened; n*=6, S*=12; meander; capped by an alpha-helix
  4. 1798839Superfamily b.55.1: PH domain-like [50729] (14 families) (S)
  5. 1799421Family b.55.1.0: automated matches [191311] (1 protein)
    not a true family
  6. 1799422Protein automated matches [190052] (5 species)
    not a true protein

Species:

  1. 1799423Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [194506] (21 PDB entries)
    1. Domain for 3m1i:
    2. Domain for 4gmx:
    3. Domain for 4gpt:
    4. Domain for 4hat:
    5. Domain for 4hau:
    6. Domain for 4hav:
    7. Domain for 4haw:
    8. Domain for 4hax:
    9. Domain for 4hay:
    10. Domain for 4haz:
    11. Domain for 4hb0:
    12. Domain for 4hb2:
    13. Domain for 4hb3:
    14. Domain for 4hb4:
    15. Domain for 4wvf:
    16. Domain for 5cll:
    17. Domain for 5dh9:
    18. Domain for 5dha:
    19. Domain for 5dhf:
    20. Domain for 5di9:
    21. Domain for 5dif:
  2. 1799445Chicken (Gallus gallus) [TaxId:9031] [254875] (2 PDB entries)
    1. Domain for 2j0m:
    2. Domain for 3zdt:
  3. 1799448Human (Homo sapiens) [TaxId:9606] [186914] (36 PDB entries)
    1. Domain for 1zm0:
    2. Domain for 2d9x:
    3. Domain for 2d9y:
    4. Domain for 2d9z:
    5. Domain for 2dhj:
    6. Domain for 2dkp:
    7. Domain for 2dlw:
    8. Domain for 2dn6:
    9. Domain for 2dyq:
    10. Domain for 2he7:
    11. Domain for 2jp2:
    12. Domain for 2lul:
    13. Domain for 2m38:
    14. Domain for 2q13:
    15. Domain for 2yry:
    16. Domain for 2z0o:
    17. Domain for 3cik:
    18. Domains for 3dxc:
      1. 1799460Domain d3dxca_: 3dxc A: [174317]
        automated match to d1wgua_
      2. 1799461Domain d3dxcc_: 3dxc C: [174318]
        automated match to d1wgua_
    19. Domains for 3dxd:
      1. 1799463Domain d3dxda_: 3dxd A: [174319]
        automated match to d1wgua_
        mutant
      2. 1799464Domain d3dxdc_: 3dxd C: [174320]
        automated match to d1wgua_
        mutant
    20. Domains for 3dxe:
      1. 1799458Domain d3dxea_: 3dxe A: [174321]
        automated match to d1wgua_
        mutant
      2. 1799459Domain d3dxec_: 3dxe C: [174322]
        automated match to d1wgua_
        mutant
    21. Domain for 3krw:
    22. Domain for 3krx:
    23. Domains for 3odo:
      1. 1799478Domain d3odoa2: 3odo A:624-761 [233081]
        Other proteins in same PDB: d3odoa1, d3odob1
        automated match to d1xcga2
      2. 1799479Domain d3odob2: 3odo B:624-761 [233082]
        Other proteins in same PDB: d3odoa1, d3odob1
        automated match to d1xcga2
    24. Domains for 3p6a:
      1. 1799471Domain d3p6aa2: 3p6a A:624-765 [233181]
        Other proteins in same PDB: d3p6aa1, d3p6ab1
        automated match to d1xcga2
        mutant
      2. 1799472Domain d3p6ab2: 3p6a B:624-765 [233178]
        Other proteins in same PDB: d3p6aa1, d3p6ab1
        automated match to d1xcga2
        mutant
    25. Domains for 3qij:
      1. 1799449Domain d3qija3: 3qij A:397-488 [248904]
        Other proteins in same PDB: d3qija1, d3qija2, d3qijb1, d3qijb2
        automated match to d1gg3a2
        complexed with unx
      2. 1799450Domain d3qijb3: 3qij B:397-488 [248907]
        Other proteins in same PDB: d3qija1, d3qija2, d3qijb1, d3qijb2
        automated match to d1gg3a2
        complexed with unx
    26. Domains for 3u8z:
      1. 1799467Domain d3u8za2: 3u8z A:215-312 [250152]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      2. 1799468Domain d3u8zb2: 3u8z B:215-312 [250154]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      3. 1799469Domain d3u8zc3: 3u8z C:215-312 [250157]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
      4. 1799470Domain d3u8zd2: 3u8z D:215-312 [250159]
        Other proteins in same PDB: d3u8za1, d3u8zb1, d3u8zc1, d3u8zc2, d3u8zd1
        automated match to d2zpya2
    27. Domain for 3v5w:
    28. Domains for 4hhv:
      1. 1799454Domain d4hhva_: 4hhv A: [266337]
        automated match to d2d9ya_
        complexed with act, cl, gol, so4
      2. 1799455Domain d4hhvb_: 4hhv B: [266338]
        automated match to d2d9ya_
        complexed with act, cl, gol, so4
    29. Domain for 4ifs:
    30. Domain for 4l6e:
    31. Domains for 4my6:
      1. 1799451Domain d4my6a_: 4my6 A: [263067]
        automated match to d2jp2a_
        complexed with 3vh, br
      2. 1799452Domain d4my6b_: 4my6 B: [260330]
        automated match to d2jp2a_
        complexed with 3vh, br
    32. Domains for 4ny0:
      1. 1799481Domain d4ny0a3: 4ny0 A:254-362 [254033]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
      2. 1799482Domain d4ny0b3: 4ny0 B:254-362 [254036]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
      3. 1799483Domain d4ny0d3: 4ny0 D:254-362 [254039]
        Other proteins in same PDB: d4ny0a1, d4ny0a2, d4ny0b1, d4ny0b2, d4ny0d1, d4ny0d2
        automated match to d2al6a2
    33. Domain for 4pnk:
    34. Domains for 4zri:
      1. 1799485Domain d4zria3: 4zri A:215-312 [274142]
        Other proteins in same PDB: d4zria1, d4zria2, d4zrib1, d4zrib2
        automated match to d1h4ra2
      2. 1799486Domain d4zrib3: 4zri B:215-311 [274139]
        Other proteins in same PDB: d4zria1, d4zria2, d4zrib1, d4zrib2
        automated match to d1h4ra2
    35. Domain for 4zrj:
    36. Domain for 5cll:
  4. 1799499Mouse (Mus musculus) [TaxId:10090] [232271] (5 PDB entries)
    1. Domains for 2d2q:
      1. 1799512Domain d2d2qa2: 2d2q A:199-299 [131183]
        Other proteins in same PDB: d2d2qa1, d2d2qa3, d2d2qb1, d2d2qb3
        automated match to d2zpya2
      2. 1799513Domain d2d2qb2: 2d2q B:199-304 [131186]
        Other proteins in same PDB: d2d2qa1, d2d2qa3, d2d2qb1, d2d2qb3
        automated match to d2zpya2
    2. Domains for 3g9w:
      1. 1799500Domain d3g9wa2: 3g9w A:312-408 [232273]
        Other proteins in same PDB: d3g9wa1, d3g9wb1
        automated match to d1mixa2
        complexed with gol, peg
      2. 1799501Domain d3g9wb2: 3g9w B:312-408 [232274]
        Other proteins in same PDB: d3g9wa1, d3g9wb1
        automated match to d1mixa2
        complexed with gol, peg
    3. Domains for 3wa0:
      1. 1799502Domain d3wa0a3: 3wa0 A:215-312 [256459]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      2. 1799503Domain d3wa0b3: 3wa0 B:215-312 [262356]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      3. 1799504Domain d3wa0c3: 3wa0 C:215-313 [262359]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      4. 1799505Domain d3wa0d3: 3wa0 D:215-313 [262362]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      5. 1799506Domain d3wa0e3: 3wa0 E:215-312 [262365]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
      6. 1799507Domain d3wa0f3: 3wa0 F:215-311 [262368]
        Other proteins in same PDB: d3wa0a1, d3wa0a2, d3wa0b1, d3wa0b2, d3wa0c1, d3wa0c2, d3wa0d1, d3wa0d2, d3wa0e1, d3wa0e2, d3wa0f1, d3wa0f2
        automated match to d1h4ra2
    4. Domains for 4p7i:
      1. 1799514Domain d4p7ia3: 4p7i A:215-312 [259916]
        Other proteins in same PDB: d4p7ia1, d4p7ia2, d4p7ib1, d4p7ib2
        automated match to d1h4ra2
        complexed with gol
      2. 1799515Domain d4p7ib3: 4p7i B:215-312 [263444]
        Other proteins in same PDB: d4p7ia1, d4p7ia2, d4p7ib1, d4p7ib2
        automated match to d1h4ra2
        complexed with gol
    5. Domains for 4zrk:
      1. 1799508Domain d4zrka3: 4zrk A:215-311 [274132]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      2. 1799509Domain d4zrkb3: 4zrk B:215-311 [274122]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      3. 1799510Domain d4zrkc3: 4zrk C:215-313 [274125]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
      4. 1799511Domain d4zrkd3: 4zrk D:215-311 [274128]
        Other proteins in same PDB: d4zrka1, d4zrka2, d4zrkb1, d4zrkb2, d4zrkc1, d4zrkc2, d4zrkd1, d4zrkd2
        automated match to d1h4ra2
  5. 1799516Western clawed frog (Xenopus tropicalis) [TaxId:8364] [186773] (2 PDB entries)
    1. Domain for 1tj6:
    2. Domain for 1xod:

More info for Protein automated matches from b.55.1.0: automated matches

Timeline for Protein automated matches from b.55.1.0: automated matches: