Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 987024Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 987025Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (25 families) (S)
    division into families based on beta-sheet topologies
  5. 987698Family c.37.1.8: G proteins [52592] (79 proteins)
    core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest
  6. 988558Protein automated matches [190047] (13 species)
    not a true protein

Species:

  1. 988559Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187069] (2 PDB entries)
    1. Domain for 2eqb:
    2. Domains for 3a58:
      1. 988560Domain d3a58b_: 3a58 B: [171747]
        automated match to d1ow3b_
        complexed with gnp, mg, po4
      2. 988561Domain d3a58d_: 3a58 D: [171748]
        automated match to d1ow3b_
        complexed with gnp, mg, po4
      3. 988562Domain d3a58f_: 3a58 F: [171749]
        automated match to d1ow3b_
        complexed with gnp, mg, po4
  2. 988564Chinese hamster (Cricetulus griseus) [TaxId:10029] [187100] (2 PDB entries)
    1. Domains for 2fa9:
      1. 988567Domain d2fa9a_: 2fa9 A: [164309]
        automated match to d1f6ba_
        complexed with gdp, mg, so4
      2. 988568Domain d2fa9b_: 2fa9 B: [164310]
        automated match to d1f6ba_
        complexed with gdp, mg, so4
    2. Domains for 2fmx:
      1. 988565Domain d2fmxa_: 2fmx A: [133796]
        automated match to d1f6ba_
        complexed with gdp, mg, so4
      2. 988566Domain d2fmxb_: 2fmx B: [133797]
        automated match to d1f6ba_
        complexed with gdp, mg, so4
  3. 988569Cryptosporidium parvum [TaxId:5807] [188236] (1 PDB entry)
  4. 988571Escherichia coli [TaxId:469008] [187117] (3 PDB entries)
    1. Domains for 2gj8:
      1. 988572Domain d2gj8a_: 2gj8 A: [135270]
        automated match to d1rfla_
        complexed with alf, gdp, k, mg, se
      2. 988573Domain d2gj8b_: 2gj8 B: [135271]
        automated match to d1rfla_
        complexed with alf, gdp, k, mg, se
      3. 988574Domain d2gj8c_: 2gj8 C: [135272]
        automated match to d1rfla_
        complexed with alf, gdp, k, mg, se
      4. 988575Domain d2gj8d_: 2gj8 D: [135273]
        automated match to d1rfla_
        complexed with alf, gdp, k, mg, se
    2. Domains for 2gj9:
      1. 988578Domain d2gj9a_: 2gj9 A: [135274]
        automated match to d1rfla_
        complexed with alf, gdp, mg, rb
      2. 988579Domain d2gj9b_: 2gj9 B: [135275]
        automated match to d1rfla_
        complexed with alf, gdp, mg, rb
      3. 988580Domain d2gj9c_: 2gj9 C: [135276]
        automated match to d1rfla_
        complexed with alf, gdp, mg, rb
      4. 988581Domain d2gj9d_: 2gj9 D: [135277]
        automated match to d1rfla_
        complexed with alf, gdp, mg, rb
    3. Domains for 2gja:
      1. 988576Domain d2gjaa_: 2gja A: [135278]
        automated match to d1rfla_
        complexed with alf, gdp, mg, nh4
      2. 988577Domain d2gjab_: 2gja B: [135279]
        automated match to d1rfla_
        complexed with alf, gdp, mg, nh4
  5. 988582Fruit fly (Drosophila melanogaster) [TaxId:7227] [189700] (1 PDB entry)
  6. 988585Human (Homo sapiens) [TaxId:9606] [186768] (67 PDB entries)
    1. Domain for 1yzk:
    2. Domains for 2bme:
      1. 988595Domain d2bmea_: 2bme A: [128790]
        automated match to d2bmda1
        complexed with bme, gnp, mg, trs
      2. 988596Domain d2bmeb_: 2bme B: [161393]
        automated match to d2bmda1
        complexed with bme, gnp, mg, trs
      3. 988597Domain d2bmec_: 2bme C: [161394]
        automated match to d2bmda1
        complexed with bme, gnp, mg, trs
      4. 988598Domain d2bmed_: 2bme D: [161395]
        automated match to d2bmda1
        complexed with bme, gnp, mg, trs
    3. Domain for 2c2h:
    4. Domains for 2c5l:
      1. 988635Domain d2c5la_: 2c5l A: [129922]
        Other proteins in same PDB: d2c5lc1, d2c5ld_
        automated match to d1aa9__
        complexed with gol, gtp, mg
      2. 988636Domain d2c5lb_: 2c5l B: [129923]
        Other proteins in same PDB: d2c5lc1, d2c5ld_
        automated match to d1aa9__
        complexed with gol, gtp, mg
    5. Domain for 2ce2:
    6. Domains for 2cjw:
      1. 988660Domain d2cjwa_: 2cjw A: [163423]
        automated match to d2g3ya1
        complexed with gdp, mg
      2. 988661Domain d2cjwb_: 2cjw B: [163424]
        automated match to d2g3ya1
        complexed with gdp, mg
    7. Domain for 2cl0:
    8. Domain for 2cl6:
    9. Domain for 2cl7:
    10. Domain for 2clc:
    11. Domain for 2cld:
    12. Domains for 2cls:
      1. 988675Domain d2clsa_: 2cls A: [163443]
        automated match to d1gwna_
        complexed with gtp, mg
      2. 988676Domain d2clsb_: 2cls B: [163444]
        automated match to d1gwna_
        complexed with gtp, mg
    13. Domains for 2dpx:
      1. 988625Domain d2dpxa_: 2dpx A: [163655]
        automated match to d2gjsa1
        complexed with gdp, mg
      2. 988626Domain d2dpxb_: 2dpx B: [163656]
        automated match to d2gjsa1
        complexed with gdp, mg
    14. Domains for 2e9s:
      1. 988616Domain d2e9sa_: 2e9s A: [163916]
        automated match to d1yzqa1
        complexed with gdp, mg, no3
      2. 988617Domain d2e9sb_: 2e9s B: [163917]
        automated match to d1yzqa1
        complexed with gdp, mg, no3
      3. 988618Domain d2e9sc_: 2e9s C: [163918]
        automated match to d1yzqa1
        complexed with gdp, mg, no3
    15. Domain for 2fe4:
    16. Domain for 2ffq:
    17. Domains for 2g0n:
      1. 988622Domain d2g0na_: 2g0n A: [164535]
        automated match to d2c2ha1
        complexed with cl, gdp, mg
      2. 988623Domain d2g0nb_: 2g0n B: [164536]
        automated match to d2c2ha1
        complexed with cl, gdp, mg
    18. Domain for 2gf9:
    19. Domains for 2gil:
      1. 988639Domain d2gila_: 2gil A: [164720]
        automated match to d1yzqa1
        complexed with gtp, mg
      2. 988640Domain d2gilb_: 2gil B: [164721]
        automated match to d1yzqa1
        complexed with gtp, mg
      3. 988641Domain d2gilc_: 2gil C: [164722]
        automated match to d1yzqa1
        complexed with gtp, mg
      4. 988642Domain d2gild_: 2gil D: [164723]
        automated match to d1yzqa1
        complexed with gtp, mg
    20. Domains for 2gzd:
      1. 988691Domain d2gzda_: 2gzd A: [135901]
        Other proteins in same PDB: d2gzdc1, d2gzdd1
        automated match to d1oiva_
        complexed with gtp, mg
      2. 988692Domain d2gzdb_: 2gzd B: [135902]
        Other proteins in same PDB: d2gzdc1, d2gzdd1
        automated match to d1oiva_
        complexed with gtp, mg
    21. Domain for 2gzh:
    22. Domains for 2h7v:
      1. 988698Domain d2h7va_: 2h7v A: [136223]
        automated match to d1hh4a_
        complexed with gdp, mg
      2. 988699Domain d2h7vb_: 2h7v B: [136224]
        automated match to d1hh4a_
        complexed with gdp, mg
    23. Domains for 2hei:
      1. 988609Domain d2heia_: 2hei A: [165070]
        automated match to d1r2qa_
        complexed with d1d, gdp
      2. 988610Domain d2heib_: 2hei B: [165071]
        automated match to d1r2qa_
        complexed with d1d, gdp
    24. Domains for 2hv8:
      1. 988630Domain d2hv8a_: 2hv8 A: [136794]
        Other proteins in same PDB: d2hv8d1, d2hv8e1
        automated match to d1oiva_
        complexed with 2me, gtp, mes, mg, so4
      2. 988631Domain d2hv8b_: 2hv8 B: [136795]
        Other proteins in same PDB: d2hv8d1, d2hv8e1
        automated match to d1oiva_
        complexed with 2me, gtp, mes, mg, so4
      3. 988632Domain d2hv8c_: 2hv8 C: [136796]
        Other proteins in same PDB: d2hv8d1, d2hv8e1
        automated match to d1oiva_
        complexed with 2me, gtp, mes, mg, so4
    25. Domains for 2ic5:
      1. 988613Domain d2ic5a_: 2ic5 A: [165484]
        automated match to d2c2ha1
        complexed with btb, cl, gdp, gnp, mg
      2. 988614Domain d2ic5b_: 2ic5 B: [165485]
        automated match to d2c2ha1
        complexed with btb, cl, gdp, gnp, mg
    26. Domain for 2iwr:
    27. Domains for 2nzj:
      1. 988687Domain d2nzja_: 2nzj A: [166471]
        automated match to d2g3ya1
        complexed with cl, gdp, mg
      2. 988688Domain d2nzjb_: 2nzj B: [166472]
        automated match to d2g3ya1
        complexed with cl, gdp, mg
      3. 988689Domain d2nzjc_: 2nzj C: [166473]
        automated match to d2g3ya1
        complexed with cl, gdp, mg
      4. 988690Domain d2nzjd_: 2nzj D: [166474]
        automated match to d2g3ya1
        complexed with cl, gdp, mg
    28. Domain for 2ocb:
    29. Domains for 2ov2:
      1. 988643Domain d2ov2a_: 2ov2 A: [166859]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      2. 988644Domain d2ov2b_: 2ov2 B: [166860]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      3. 988645Domain d2ov2c_: 2ov2 C: [166861]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      4. 988646Domain d2ov2d_: 2ov2 D: [166862]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      5. 988647Domain d2ov2e_: 2ov2 E: [166863]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      6. 988648Domain d2ov2f_: 2ov2 F: [166864]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      7. 988649Domain d2ov2g_: 2ov2 G: [166865]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
      8. 988650Domain d2ov2h_: 2ov2 H: [166866]
        automated match to d2c2ha1
        complexed with cl, edo, gcp, mg
    30. Domain for 2qme:
    31. Domains for 2rex:
      1. 988677Domain d2rexb_: 2rex B: [168068]
        automated match to d1gwna_
        complexed with ca, gnp, mg, unx
      2. 988678Domain d2rexd_: 2rex D: [168069]
        automated match to d1gwna_
        complexed with ca, gnp, mg, unx
    32. Domain for 2uzi:
    33. Domain for 2vh5:
    34. Domain for 2vrw:
    35. Domain for 2w2t:
    36. Domains for 2w2v:
      1. 988671Domain d2w2va_: 2w2v A: [169029]
        automated match to d1ds6a_
        complexed with gtp
      2. 988672Domain d2w2vb_: 2w2v B: [169030]
        automated match to d1ds6a_
        complexed with gtp
      3. 988673Domain d2w2vc_: 2w2v C: [169031]
        automated match to d1ds6a_
        complexed with gtp
      4. 988674Domain d2w2vd_: 2w2v D: [169032]
        automated match to d1ds6a_
        complexed with gtp
    37. Domains for 2w2x:
      1. 988693Domain d2w2xa_: 2w2x A: [169033]
        automated match to d1ds6a_
        complexed with gsp, mg
      2. 988694Domain d2w2xb_: 2w2x B: [169034]
        automated match to d1ds6a_
        complexed with gsp, mg
    38. Domain for 2wwx:
    39. Domain for 2x1v:
    40. Domains for 2yin:
      1. 988696Domain d2yinc_: 2yin C: [170809]
        automated match to d1foeb_
      2. 988697Domain d2yind_: 2yin D: [170810]
        automated match to d1foeb_
    41. Domain for 3cf6:
    42. Domain for 3con:
    43. Domain for 3doe:
    44. Domain for 3dz8:
    45. Domains for 3gft:
      1. 988663Domain d3gfta_: 3gft A: [176604]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
      2. 988664Domain d3gftb_: 3gft B: [176605]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
      3. 988665Domain d3gftc_: 3gft C: [176606]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
      4. 988666Domain d3gftd_: 3gft D: [176607]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
      5. 988667Domain d3gfte_: 3gft E: [176608]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
      6. 988668Domain d3gftf_: 3gft F: [176609]
        automated match to d1aa9a_
        complexed with cit, gnp, mg, unx
    46. Domain for 3gj0:
    47. Domain for 3gj3:
      • 988606Domain d3gj3a_: 3gj3 A: [176685]
        Other proteins in same PDB: d3gj3b_
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    48. Domains for 3gj4:
      1. 988658Domain d3gj4a_: 3gj4 A: [176687]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
      2. 988659Domain d3gj4c_: 3gj4 C: [176688]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    49. Domains for 3gj5:
      1. 988619Domain d3gj5a_: 3gj5 A: [176689]
        Other proteins in same PDB: d3gj5b_, d3gj5d_
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
      2. 988620Domain d3gj5c_: 3gj5 C: [176691]
        Other proteins in same PDB: d3gj5b_, d3gj5d_
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    50. Domain for 3gj6:
      • 988706Domain d3gj6a_: 3gj6 A: [176693]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    51. Domains for 3gj7:
      1. 988633Domain d3gj7a_: 3gj7 A: [176694]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
      2. 988634Domain d3gj7c_: 3gj7 C: [176695]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    52. Domains for 3gj8:
      1. 988611Domain d3gj8a_: 3gj8 A: [176696]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
      2. 988612Domain d3gj8c_: 3gj8 C: [176697]
        automated match to d1byub_
        protein/DNA complex; protein/RNA complex; complexed with gdp, mg, zn
    53. Domains for 3gjx:
      1. 988707Domain d3gjxc_: 3gjx C: [176713]
        automated match to d1byub_
        protein/RNA complex; complexed with cl, gtp, mg, na
      2. 988708Domain d3gjxf_: 3gjx F: [176714]
        automated match to d1byub_
        protein/RNA complex; complexed with cl, gtp, mg, na
    54. Domain for 3jza:
    55. Domain for 3kkm:
    56. Domain for 3kkn:
    57. Domain for 3kuc:
    58. Domains for 3l43:
      1. 988681Domain d3l43a_: 3l43 A: [179925]
        automated match to d2akab1
        complexed with gdp, unx
      2. 988682Domain d3l43b_: 3l43 B: [179926]
        automated match to d2akab1
        complexed with gdp, unx
      3. 988683Domain d3l43c_: 3l43 C: [179927]
        automated match to d2akab1
        complexed with gdp, unx
      4. 988684Domain d3l43d_: 3l43 D: [179928]
        automated match to d2akab1
        complexed with gdp, unx
    59. Domains for 3law:
      1. 988709Domain d3lawa_: 3law A: [180145]
        automated match to d1vg0b_
        complexed with gnp, mg; mutant
      2. 988710Domain d3lawb_: 3law B: [180146]
        automated match to d1vg0b_
        complexed with gnp, mg; mutant
      3. 988711Domain d3lawc_: 3law C: [180147]
        automated match to d1vg0b_
        complexed with gnp, mg; mutant
      4. 988712Domain d3lawd_: 3law D: [180148]
        automated match to d1vg0b_
        complexed with gnp, mg; mutant
      5. 988713Domain d3lawe_: 3law E: [180149]
        automated match to d1vg0b_
        complexed with gnp, mg; mutant
    60. Domains for 3lo5:
      1. 988700Domain d3lo5a_: 3lo5 A: [180462]
        automated match to d121pa_
        complexed with ca, gdp, so4; mutant
      2. 988701Domain d3lo5c_: 3lo5 C: [180463]
        automated match to d121pa_
        complexed with ca, gdp, so4; mutant
      3. 988702Domain d3lo5e_: 3lo5 E: [180464]
        automated match to d121pa_
        complexed with ca, gdp, so4; mutant
    61. Domains for 3nkv:
      1. 988599Domain d3nkva_: 3nkv A: [182345]
        automated match to d2fola1
        complexed with amp, ba, gnp, mg
      2. 988600Domain d3nkvb_: 3nkv B: [182346]
        automated match to d2fola1
        complexed with amp, ba, gnp, mg
    62. Domains for 3q72:
      1. 988604Domain d3q72a_: 3q72 A: [184237]
        automated match to d2gjsa1
        complexed with ca, gnp, mg
      2. 988605Domain d3q72b_: 3q72 B: [184238]
        automated match to d2gjsa1
        complexed with ca, gnp, mg
    63. Domains for 3q7p:
      1. 988704Domain d3q7pa_: 3q7p A: [184260]
        automated match to d2gjsa1
        complexed with gnp, mg
      2. 988705Domain d3q7pb_: 3q7p B: [184261]
        automated match to d2gjsa1
        complexed with gnp, mg
    64. Domains for 3q7q:
      1. 988669Domain d3q7qa_: 3q7q A: [184262]
        automated match to d2gjsa1
        complexed with ca, gnp, mg
      2. 988670Domain d3q7qb_: 3q7q B: [184263]
        automated match to d2gjsa1
        complexed with ca, gnp, mg
    65. Domains for 3qbt:
      1. 988652Domain d3qbta_: 3qbt A: [184326]
        automated match to d2fu5c1
        complexed with gnp, mg, so4
      2. 988653Domain d3qbtc_: 3qbt C: [184327]
        automated match to d2fu5c1
        complexed with gnp, mg, so4
      3. 988654Domain d3qbte_: 3qbt E: [184328]
        automated match to d2fu5c1
        complexed with gnp, mg, so4
      4. 988655Domain d3qbtg_: 3qbt G: [184329]
        automated match to d2fu5c1
        complexed with gnp, mg, so4
    66. Domain for 3t5g:
    67. Domain for 3tnf:
  7. 988714Malaria parasite (Plasmodium falciparum) [TaxId:5833] [189514] (1 PDB entry)
  8. 988716Mouse (Mus musculus) [TaxId:10090] [186896] (7 PDB entries)
    1. Domains for 2if0:
      1. 988727Domain d2if0a_: 2if0 A: [165529]
        automated match to d2f7sa1
        complexed with gdp, mg
      2. 988728Domain d2if0b_: 2if0 B: [165530]
        automated match to d2f7sa1
        complexed with gdp, mg
    2. Domains for 3bc1:
      1. 988721Domain d3bc1a_: 3bc1 A: [172533]
        automated match to d2f7sa1
        complexed with gnp, mg
      2. 988722Domain d3bc1e_: 3bc1 E: [172534]
        automated match to d2f7sa1
        complexed with gnp, mg
    3. Domains for 3kko:
      1. 988723Domain d3kkoa_: 3kko A: [179404]
        automated match to d1x1ra1
        complexed with gnp, mg, so4
      2. 988724Domain d3kkob_: 3kko B: [179405]
        automated match to d1x1ra1
        complexed with gnp, mg, so4
      3. 988725Domain d3kkop_: 3kko P: [179406]
        automated match to d1x1ra1
        complexed with gnp, mg, so4
    4. Domain for 3kkp:
    5. Domain for 3kkq:
    6. Domain for 3pir:
    7. Domains for 3q85:
      1. 988719Domain d3q85a_: 3q85 A: [184272]
        automated match to d2g3ya1
        complexed with gnp, mg, scn
      2. 988720Domain d3q85b_: 3q85 B: [184273]
        automated match to d2g3ya1
        complexed with gnp, mg, scn
  9. 988729Pea (Pisum sativum) [TaxId:3888] [188398] (1 PDB entry)
  10. 988738Plasmodium falciparum [TaxId:36329] [188290] (1 PDB entry)
  11. 988744Pyrococcus horikoshii [TaxId:70601] [187582] (1 PDB entry)
  12. 988747Saccharomyces cerevisiae [TaxId:559292] [189771] (2 PDB entries)
    1. Domain for 3rwm:
    2. Domains for 3rwo:
      1. 988748Domain d3rwoa_: 3rwo A: [185199]
        automated match to d2f9la1
        complexed with gdp, mg
      2. 988749Domain d3rwob_: 3rwo B: [185200]
        automated match to d2f9la1
        complexed with gdp, mg
  13. 988751Thale cress (Arabidopsis thaliana) [TaxId:3702] [188355] (6 PDB entries)
    1. Domains for 2efc:
      1. 988755Domain d2efcb_: 2efc B: [163979]
        automated match to d1r2qa_
        complexed with gdp
      2. 988756Domain d2efcd_: 2efc D: [163980]
        automated match to d1r2qa_
        complexed with gdp
    2. Domains for 2efe:
      1. 988757Domain d2efeb_: 2efe B: [163981]
        automated match to d1r2qa_
        complexed with gnh
      2. 988758Domain d2efed_: 2efe D: [163982]
        automated match to d1r2qa_
        complexed with gnh
    3. Domains for 2efh:
      1. 988753Domain d2efhb_: 2efh B: [163983]
        automated match to d1r2qa_
        complexed with gdp
      2. 988754Domain d2efhd_: 2efh D: [163984]
        automated match to d1r2qa_
        complexed with gdp
    4. Domains for 2wbl:
      1. 988759Domain d2wblc_: 2wbl C: [169187]
        automated match to d1ds6a_
      2. 988760Domain d2wbld_: 2wbl D: [169188]
        automated match to d1ds6a_
    5. Domain for 3bb3:
    6. Domain for 3bwd:

More info for Protein automated matches from c.37.1.8: G proteins

Timeline for Protein automated matches from c.37.1.8: G proteins: