SCOPe 2.01: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.01
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
Similar in architecture to the superfamily I but partly differs in topology
Family c.94.1.0: automated matches [191309] (1 protein)
not a true family
Protein automated matches [190039] (20 species)
not a true protein

Species:

Actinomyces odontolyticus [TaxId:411466] [189886] (1 PDB entry)
- Domain for 3up9:
  - Domain d3up9a_: 3up9 A: [186369]
    automated match to d1xs5a_
    complexed with mse, pe4, pg4
Bacillus subtilis [TaxId:1423] [187940] (2 PDB entries)
1. Domains for 2o1m:
  1. Domain d2o1ma_: 2o1m A: [166493]
    automated match to d1ggga_
    complexed with so4
  2. Domain d2o1mb_: 2o1m B: [166494]
    automated match to d1ggga_
    complexed with so4
2. Domain for 2vd2:
  - Domain d2vd2a_: 2vd2 A: [168463]
    automated match to d1z7me1
Bacillus subtilis [TaxId:535025] [189693] (1 PDB entry)
- Domain for 3r6u:
  - Domain d3r6ua_: 3r6u A: [184826]
    automated match to d1sw1a_
    complexed with cht
Chlamydia trachomatis [TaxId:813] [188892] (1 PDB entry)
- Domains for 3del:
  1. Domain d3delb_: 3del B: [173868]
    automated match to d1hpbp_
  2. Domain d3delc_: 3del C: [173869]
    automated match to d1hpbp_
  3. Domain d3deld_: 3del D: [173870]
    automated match to d1hpbp_
  4. Domain d3delf_: 3del F: [173871]
    automated match to d1hpbp_
Chlamydophila pneumoniae [TaxId:83558] [189367] (1 PDB entry)
- Domain for 3n26:
  - Domain d3n26a_: 3n26 A: [181835]
    automated match to d1hpbp_
    complexed with arg
Coxiella burnetii [TaxId:777] [189739] (1 PDB entry)
- Domain for 3tql:
  - Domain d3tqla_: 3tql A: [185912]
    automated match to d1lafe_
    complexed with arg, imd
Escherichia coli [TaxId:562] [189696] (1 PDB entry)
- Domain for 3o9p:
  - Domain d3o9pa_: 3o9p A: [182899]
    automated match to d1b05a_
    complexed with mhi, zn
Geobacter sulfurreducens [TaxId:35554] [188938] (1 PDB entry)
- Domain for 3h7m:
  - Domain d3h7ma_: 3h7m A: [177307]
    automated match to d1wdna_
    complexed with na
Haemophilus parasuis [TaxId:456298] [189829] (1 PDB entry)
- Domain for 3tpa:
  - Domain d3tpaa_: 3tpa A: [185901]
    automated match to d1dppa_
Legionella pneumophila [TaxId:272624] [189169] (1 PDB entry)
- Domains for 3kzg:
  1. Domain d3kzga_: 3kzg A: [179828]
    automated match to d1hpbp_
  2. Domain d3kzgb_: 3kzg B: [179829]
    automated match to d1hpbp_
  3. Domain d3kzgc_: 3kzg C: [179830]
    automated match to d1hpbp_
  4. Domain d3kzgd_: 3kzg D: [179831]
    automated match to d1hpbp_
Norway rat (Rattus norvegicus) [TaxId:10116] [186759] (10 PDB entries)
1. Domains for 1s7y:
  1. Domain d1s7ya_: 1s7y A: [161347]
    automated match to d1lb8a_
    complexed with glu
  2. Domain d1s7yb_: 1s7y B: [161348]
    automated match to d1lb8a_
    complexed with glu
2. Domains for 1s9t:
  1. Domain d1s9ta_: 1s9t A: [161350]
    automated match to d1lb8a_
    complexed with cl, qus
  2. Domain d1s9tb_: 1s9t B: [161351]
    automated match to d1lb8a_
    complexed with cl, qus
3. Domains for 1sd3:
  1. Domain d1sd3a_: 1sd3 A: [161352]
    automated match to d1lb8a_
    complexed with sym
  2. Domain d1sd3b_: 1sd3 B: [161353]
    automated match to d1lb8a_
    complexed with sym
4. Domains for 1tt1:
  1. Domain d1tt1a_: 1tt1 A: [161355]
    automated match to d1lb8a_
    complexed with kai
  2. Domain d1tt1b_: 1tt1 B: [161356]
    automated match to d1lb8a_
    complexed with kai
5. Domain for 1ycj:
  - Domain d1ycjb_: 1ycj B: [161365]
    Other proteins in same PDB: d1ycja1
    automated match to d1lb8a_
    complexed with glu, so4
6. Domain for 2a5t:
  - Domain d2a5tb_: 2a5t B: [161379]
    Other proteins in same PDB: d2a5ta_
    automated match to d1pb7a_
    complexed with glu, gly
7. Domains for 2f34:
  1. Domain d2f34a_: 2f34 A: [161417]
    automated match to d1lb8a_
    complexed with 1pe, cl, uba
  2. Domain d2f34b_: 2f34 B: [161418]
    automated match to d1lb8a_
    complexed with 1pe, cl, uba
8. Domains for 2f35:
  1. Domain d2f35a_: 2f35 A: [161419]
    automated match to d1lb8a_
    complexed with 1pe, cl, ubc
  2. Domain d2f35b_: 2f35 B: [161420]
    automated match to d1lb8a_
    complexed with 1pe, cl, ubc
9. Domains for 2f36:
  1. Domain d2f36a_: 2f36 A: [161421]
    automated match to d1lb8a_
    complexed with glu, so4
  2. Domain d2f36b_: 2f36 B: [161422]
    automated match to d1lb8a_
    complexed with glu, so4
  3. Domain d2f36c_: 2f36 C: [161423]
    automated match to d1lb8a_
    complexed with glu, so4
  4. Domain d2f36d_: 2f36 D: [161424]
    automated match to d1lb8a_
    complexed with glu, so4
10. Domains for 2ojt:
  1. Domain d2ojta_: 2ojt A: [161490]
    automated match to d1lb8a_
    complexed with 1pe, br, uba
  2. Domain d2ojtb_: 2ojt B: [161491]
    automated match to d1lb8a_
    complexed with 1pe, br, uba
Nostoc punctiforme [TaxId:63737] [188325] (1 PDB entry)
- Domains for 2pyy:
  1. Domain d2pyya_: 2pyy A: [167351]
    automated match to d1ggga_
    complexed with glu
  2. Domain d2pyyb_: 2pyy B: [167352]
    automated match to d1ggga_
    complexed with glu
  3. Domain d2pyyc_: 2pyy C: [167353]
    automated match to d1ggga_
    complexed with glu
Pyrococcus horikoshii [TaxId:53953] [188797] (1 PDB entry)
- Domain for 3cg3:
  - Domain d3cg3a_: 3cg3 A: [173218]
    automated match to d2onke1
    complexed with wo4
Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188303] (2 PDB entries)
1. Domain for 2q88:
  - Domain d2q88a_: 2q88 A: [167470]
    automated match to d1hpbp_
    complexed with 4cs, cd
2. Domain for 2q89:
  - Domain d2q89a_: 2q89 A: [167471]
    automated match to d1hpbp_
    complexed with 6cs, cd
Salmonella typhimurium [TaxId:90371] [189953] (1 PDB entry)
- Domains for 2y7i:
  1. Domain d2y7ia_: 2y7i A: [170668]
    automated match to d1lafe_
    complexed with act, arg, gol, zn
  2. Domain d2y7ib_: 2y7i B: [170669]
    automated match to d1lafe_
    complexed with act, arg, gol, zn
Silicibacter pomeroyi [TaxId:89184] [189007] (1 PDB entry)
- Domain for 3i6v:
  - Domain d3i6va_: 3i6v A: [178120]
    automated match to d1lafe_
    complexed with gol, lys, na
Staphylococcus aureus [TaxId:158878] [189432] (1 PDB entry)
- Domains for 3o66:
  1. Domain d3o66a_: 3o66 A: [182829]
    automated match to d1sw1a_
    complexed with act, pge
  2. Domain d3o66b_: 3o66 B: [182830]
    automated match to d1sw1a_
    complexed with act, pge
Synechocystis sp. PCC 6803 [TaxId:1148] [187344] (3 PDB entries)
1. Domain for 2pt1:
  - Domain d2pt1a_: 2pt1 A: [167265]
    automated match to d1y4ta_
    complexed with so4
2. Domain for 2pt2:
  - Domain d2pt2a_: 2pt2 A: [167266]
    automated match to d1y4ta_
    complexed with edo, fe2, so4
3. Domain for 3f11:
  - Domain d3f11a_: 3f11 A: [175397]
    automated match to d1y4ta_
    complexed with edo, fe, so4
Thermotoga maritima [TaxId:243274] [187721] (3 PDB entries)
1. Domain for 2fnc:
  - Domain d2fnca_: 2fnc A: [164443]
    automated match to d1anfa_
    complexed with mlr
2. Domains for 2gha:
  1. Domain d2ghaa_: 2gha A: [164693]
    automated match to d1anfa_
    complexed with mlr
  2. Domain d2ghab_: 2gha B: [164694]
    automated match to d1anfa_
    complexed with mlr
3. Domains for 2ghb:
  1. Domain d2ghba_: 2ghb A: [164695]
    automated match to d1anfa_
  2. Domain d2ghbb_: 2ghb B: [164696]
    automated match to d1anfa_
  3. Domain d2ghbc_: 2ghb C: [164697]
    automated match to d1anfa_
Wolinella succinogenes [TaxId:844] [189100] (1 PDB entry)
- Domains for 3k4u:
  1. Domain d3k4ua_: 3k4u A: [179080]
    automated match to d1wdna_
    complexed with lys
  2. Domain d3k4ub_: 3k4u B: [179081]
    automated match to d1wdna_
    complexed with lys
  3. Domain d3k4uc_: 3k4u C: [179082]
    automated match to d1wdna_
    complexed with lys
  4. Domain d3k4ud_: 3k4u D: [179083]
    automated match to d1wdna_
    complexed with lys
  5. Domain d3k4ue_: 3k4u E: [179084]
    automated match to d1wdna_
    complexed with lys
  6. Domain d3k4uf_: 3k4u F: [179085]
    automated match to d1wdna_
    complexed with lys

More info for Protein automated matches from c.94.1.0: automated matches

Timeline for Protein automated matches from c.94.1.0: automated matches:

Protein automated matches from c.94.1.0: automated matches is new in SCOPe 2.01-stable
Protein automated matches from c.94.1.0: automated matches appears in SCOPe 2.02
Protein automated matches from c.94.1.0: automated matches appears in the current release, SCOPe 2.08