SCOP 1.71: Domain d1oxy_2: 1oxy 110-379

Lineage for d1oxy_2 (1oxy 110-379)

1. Root: SCOP 1.71

2. Class a: All alpha proteins [46456] (226 folds)

3. Fold a.86: Di-copper centre-containing domain [48055] (1 superfamily)
   multihelical

4. Superfamily a.86.1: Di-copper centre-containing domain [48056] (2 families)
   duplication: contains two structural repeats

5. Family a.86.1.1: Hemocyanin middle domain [48057] (2 proteins)

6. Protein Arthropod hemocyanin [48058] (2 species)
   N-terminal domain is all-alpha; C-terminal domain is immunoglobulin-like sandwich

7. Species Horseshoe crab (Limulus polyphemus) [TaxId:6850] [48059] (4 PDB entries)

8. Domain d1oxy_2: 1oxy 110-379 [18497]
   Other proteins in same PDB: d1oxy_1, d1oxy_3
   complexed with cu, oxy

Details for d1oxy_2

PDB Entry: 1oxy, 2.4 Å

PDB Description: crystallographic analysis of oxygenated and deoxygenated states of arthropod hemocyanin shows unusual differences

SCOP Domain Sequences for d1oxy_2:

Sequence, based on SEQRES records:

>d1oxy_2 a.86.1.1 (110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus)}
pvqeifpdkfipsaaineafkkahvrpefdespilvdvqdtgnildpeyrlayyredvgi
nahhwhwhlvypstwnpkyfgkkkdrkgelfyymhqqmcarydcerlsngmhrmlpfnnf
deplagyaphlthvasgkyysprpdglklrdlgdieisemvrmrerildsihlgyvised
gshktldelhgtdilgalvessyesvnheyygnlhnwghvtmarihdpdgrfheepgvms
dtstslrdpifynwhrfidnifheykntlk

Sequence, based on observed residues (ATOM records):

>d1oxy_2 a.86.1.1 (110-379) Arthropod hemocyanin {Horseshoe crab (Limulus polyphemus)}
pvqeifpdkfipsaaineafkkgnildpeyrlayyredvginahhwhwhlvypstwnpky
fgkkkdrkgelfyymhqqmcarydcerlsngmhrmlpfnnfdeplagyaphlthvasgky
ysprpdglklrdlgdieisemvrmrerildsihlgyvisedgshktldelhgtdilgalv
essyesvnheyygnlhnwghvtmarihdpdgrfheepgvmsdtstslrdpifynwhrfid
nifheykntlk

Timeline for d1oxy_2:

• d1oxy_2 first appeared (with stable ids) in SCOP 1.55
  
• d1oxy_2 appears in SCOP 1.69
  
• d1oxy_2 is called d1oxya2 in SCOP 1.73
  
• d1oxy_2 appears in the current release, SCOPe 2.08, called d1oxya2