SCOPe 2.06: Domain d3ptfd1: 3ptf D:1-73

Lineage for d3ptfd1 (3ptf D:1-73)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (8 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54239] (209 PDB entries)
   Uniprot P62988
   identical sequence in many other species

8. Domain d3ptfd1: 3ptf D:1-73 [183971]
   Other proteins in same PDB: d3ptfa1, d3ptfa2, d3ptfb1, d3ptfb2, d3ptfd2
   automated match to d1aara_

Details for d3ptfd1

PDB Entry: 3ptf, 2.7 Å

PDB Description: X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin

PDB Compounds: (D:) Polyubiquitin-B

SCOPe Domain Sequences for d3ptfd1:

Sequence; same for both SEQRES and ATOM records:

>d3ptfd1 d.15.1.1 (D:1-73) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

Timeline for d3ptfd1:

• d3ptfd1 first appeared in SCOPe 2.01, called d3ptfd_
  
• d3ptfd1 was called d3ptfd_ in SCOPe 2.05
  
• d3ptfd1 appears in SCOPe 2.07
  
• d3ptfd1 appears in the current release, SCOPe 2.08