Lineage for d3ptfd1 (3ptf D:1-73)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2177211Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
    core: beta(2)-alpha-beta(2); mixed beta-sheet 2143
  4. 2177212Superfamily d.15.1: Ubiquitin-like [54236] (11 families) (S)
  5. 2177213Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
    Pfam PF00240
  6. 2177487Protein Ubiquitin [54238] (8 species)
  7. 2177587Species Human (Homo sapiens) [TaxId:9606] [54239] (209 PDB entries)
    Uniprot P62988
    identical sequence in many other species
  8. 2177809Domain d3ptfd1: 3ptf D:1-73 [183971]
    Other proteins in same PDB: d3ptfa1, d3ptfa2, d3ptfb1, d3ptfb2, d3ptfd2
    automated match to d1aara_

Details for d3ptfd1

PDB Entry: 3ptf (more details), 2.7 Å

PDB Description: X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin
PDB Compounds: (D:) Polyubiquitin-B

SCOPe Domain Sequences for d3ptfd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3ptfd1 d.15.1.1 (D:1-73) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d3ptfd1:

Click to download the PDB-style file with coordinates for d3ptfd1.
(The format of our PDB-style files is described here.)

Timeline for d3ptfd1: