SCOPe 2.06: Domain d1ak4d_: 1ak4 D:

Lineage for d1ak4d_ (1ak4 D:)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
   core: 5 helices; bundle

4. Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families)

5. Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 proteins)

6. Protein HIV-1 capsid protein [47945] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (44 PDB entries)

8. Domain d1ak4d_: 1ak4 D: [18322]
   Other proteins in same PDB: d1ak4a_, d1ak4b_

Details for d1ak4d_

PDB Entry: 1ak4, 2.36 Å

PDB Description: human cyclophilin a bound to the amino-terminal domain of hiv-1 capsid

PDB Compounds: (D:) hiv-1 capsid

SCOPe Domain Sequences for d1ak4d_:

Sequence; same for both SEQRES and ATOM records:

>d1ak4d_ a.73.1.1 (D:) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmy

Timeline for d1ak4d_:

• d1ak4d_ first appeared (with stable ids) in SCOP 1.55
  
• d1ak4d_ appears in SCOPe 2.05
  
• d1ak4d_ appears in SCOPe 2.07
  
• d1ak4d_ appears in the current release, SCOPe 2.08