Lineage for d3omic_ (3omi C:)

  1. Root: SCOPe 2.04
  2. 1695624Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)
  3. 1698770Fold f.24: Cytochrome c oxidase subunit I-like [81443] (1 superfamily)
    12 transmembrane helices in an approximate threefold rotational symmetric arrangement
  4. 1698771Superfamily f.24.1: Cytochrome c oxidase subunit I-like [81442] (1 family) (S)
  5. 1698772Family f.24.1.1: Cytochrome c oxidase subunit I-like [81441] (5 proteins)
    the largest and best conserved subunit, contains two heme groups, low spin heme a and high spin heme a3
  6. 1698840Protein automated matches [190134] (3 species)
    not a true protein
  7. 1698880Species Rhodobacter sphaeroides [TaxId:272943] [189626] (4 PDB entries)
  8. 1698882Domain d3omic_: 3omi C: [183172]
    Other proteins in same PDB: d3omib1, d3omib2, d3omid1, d3omid2
    automated match to d1m56a_
    complexed with ca, cd, cl, cu, cu1, dmu, fe, hea, hth, mg, oh, trd; mutant

Details for d3omic_

PDB Entry: 3omi (more details), 2.15 Å

PDB Description: catalytic core subunits (i and ii) of cytochrome c oxidase from rhodobacter sphaeroides with d132a mutation
PDB Compounds: (C:) Cytochrome c oxidase, aa3 type, subunit I

SCOPe Domain Sequences for d3omic_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3omic_ f.24.1.1 (C:) automated matches {Rhodobacter sphaeroides [TaxId: 272943]}
wfmstnhkdigvlylftgglvglisvaftvymrmelmapgvqfmcaehlesglvkgffqs
lwpsavenctpnghlwnvmitghgilmmffvvipalfggfgnyfmplhigapamafprmn
nlsywlyvagtslavaslfapggngqlgsgigwvlypplstsesgystdlaifavhlsga
ssilgainmittflnmrapgmtmhkvplfawsifvtawlillalpvlagaitmlltdrnf
gttffqpsgggdpvlyqhilwffghpevyiivlpafgivshviatfakkpifgylpmvya
mvaigvlgfvvwahhmytaglsltqqsyfmmatmviavptgikifswiatmwggsielkt
pmlwalgflflftvggvtgivlsqasvdryyhdtyyvvahfhyvmslgavfgifagiyfw
igkmsgrqypewagklhfwmmfvganltffpqhflgrqgmprryidypeafatwnfvssl
gaflsfasflfflgvifytltrgarvtannywnehadtlewtltspppeh

SCOPe Domain Coordinates for d3omic_:

Click to download the PDB-style file with coordinates for d3omic_.
(The format of our PDB-style files is described here.)

Timeline for d3omic_: