Lineage for d1bpd_1 (1bpd 9-91)

  1. Root: SCOP 1.67
  2. 349259Class a: All alpha proteins [46456] (202 folds)
  3. 356779Fold a.60: SAM domain-like [47768] (13 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 356901Superfamily a.60.6: DNA polymerase beta, N-terminal domain-like [47802] (1 family) (S)
    contains one classic and one pseudo HhH motifs
  5. 356902Family a.60.6.1: DNA polymerase beta, N-terminal domain-like [47803] (3 proteins)
  6. 356903Protein DNA polymerase beta, N-terminal (8 kD)-domain [47804] (2 species)
    topologically similar to the second domain
  7. 356997Species Rat (Rattus norvegicus) [TaxId:10116] [47806] (10 PDB entries)
  8. 357003Domain d1bpd_1: 1bpd 9-91 [18073]
    Other proteins in same PDB: d1bpd_3, d1bpd_4
    complexed with po4

Details for d1bpd_1

PDB Entry: 1bpd (more details), 3.6 Å

PDB Description: crystal structure of rat dna polymerase beta: evidence for a common polymerase mechanism

SCOP Domain Sequences for d1bpd_1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1bpd_1 a.60.6.1 (9-91) DNA polymerase beta, N-terminal (8 kD)-domain {Rat (Rattus norvegicus)}

SCOP Domain Coordinates for d1bpd_1:

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Timeline for d1bpd_1: