Lineage for d3dy4m_ (3dy4 M:)

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2548740Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 2548741Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 2548925Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 2550690Protein Proteasome beta subunit (catalytic) [56252] (7 species)
  7. 2550699Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (199 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 2552027Domain d3dy4m_: 3dy4 M: [174375]
    Other proteins in same PDB: d3dy4a_, d3dy4b_, d3dy4c_, d3dy4e_, d3dy4f_, d3dy4g_, d3dy4o_, d3dy4p_, d3dy4q_, d3dy4s_, d3dy4t_, d3dy4u_
    automated match to d1g0u1_
    complexed with sla

Details for d3dy4m_

PDB Entry: 3dy4 (more details), 2.8 Å

PDB Description: Crystal structure of yeast 20S proteasome in complex with spirolactacystin
PDB Compounds: (M:) Proteasome component PRE4

SCOPe Domain Sequences for d3dy4m_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dy4m_ d.153.1.4 (M:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d3dy4m_:

Click to download the PDB-style file with coordinates for d3dy4m_.
(The format of our PDB-style files is described here.)

Timeline for d3dy4m_: