Lineage for d3dy4f_ (3dy4 F:)

  1. Root: SCOPe 2.01
  2. 1013083Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1044569Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1044570Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1044729Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 1044829Protein Proteasome alpha subunit (non-catalytic) [56255] (5 species)
    contains an extension to the common fold at the N-terminus
  7. 1044845Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56257] (28 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 1045062Domain d3dy4f_: 3dy4 F: [174368]
    Other proteins in same PDB: d3dy41_, d3dy42_, d3dy4g_, d3dy4h_, d3dy4i_, d3dy4j_, d3dy4k_, d3dy4l_, d3dy4m_, d3dy4n_, d3dy4u_, d3dy4v_, d3dy4w_, d3dy4x_, d3dy4y_, d3dy4z_
    automated match to d1g65f_
    complexed with sla

Details for d3dy4f_

PDB Entry: 3dy4 (more details), 2.8 Å

PDB Description: Crystal structure of yeast 20S proteasome in complex with spirolactacystin
PDB Compounds: (F:) Proteasome component C1

SCOPe Domain Sequences for d3dy4f_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dy4f_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gtgydlsnsvfspdgrnfqveyavkavengttsigikcndgvvfaveklitskllvpqkn
vkiqvvdrhigcvysglipdgrhlvnrgreeaasfkklyktpipipafadrlgqyvqaht
lynsvrpfgvstifggvdkngahlymlepsgsywgykgaatgkgrqsakaeleklvdhhp
eglsareavkqaakiiylahednkekdfeleiswcslsetnglhkfvkgdllqeaidfaq
kein

SCOPe Domain Coordinates for d3dy4f_:

Click to download the PDB-style file with coordinates for d3dy4f_.
(The format of our PDB-style files is described here.)

Timeline for d3dy4f_: