Lineage for d3dy3v_ (3dy3 V:)

  1. Root: SCOPe 2.02
  2. 1190016Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1222614Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
    4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing
  4. 1222615Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (8 families) (S)
    N-terminal residue provides two catalytic groups, nucleophile and proton donor
  5. 1222781Family d.153.1.4: Proteasome subunits [56251] (4 proteins)
  6. 1223291Protein Proteasome beta subunit (catalytic) [56252] (5 species)
  7. 1223300Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [56254] (34 PDB entries)
    The structure of yeast proteasome complexed with the proteasome activator pa26 is available from PDB (1fnt). The 1FNT entry designates protein chains by both upper case and lower case letters creating problems with its processing and presentation in SCOP; the proteasome activator pa26 structure is classified elsewhere in SCOP (a.24.8)
  8. 1223506Domain d3dy3v_: 3dy3 V: [174357]
    Other proteins in same PDB: d3dy3a_, d3dy3b_, d3dy3c_, d3dy3e_, d3dy3f_, d3dy3g_, d3dy3o_, d3dy3p_, d3dy3q_, d3dy3s_, d3dy3t_, d3dy3u_
    automated match to d1g0uh_
    complexed with slr

Details for d3dy3v_

PDB Entry: 3dy3 (more details), 2.81 Å

PDB Description: Crystal structure of yeast 20S proteasome in complex with the epimer form of spirolactacystin
PDB Compounds: (V:) Proteasome component PUP1

SCOPe Domain Sequences for d3dy3v_:

Sequence; same for both SEQRES and ATOM records: (download)

>d3dy3v_ d.153.1.4 (V:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ttivgvkfnngvviaadtrstqgpivadkncaklhrispkiwcagagtaadteavtqlig
snielhslytsreprvvsalqmlkqhlfkyqghigaylivagvdptgshlfsihahgstd
vgyylslgsgslaamavleshwkqdltkeeaiklasdaiqagiwndlgsgsnvdvcvmei
gkdaeylrnyltpnvreekqksykfprgttavlkesivnicd

SCOPe Domain Coordinates for d3dy3v_:

Click to download the PDB-style file with coordinates for d3dy3v_.
(The format of our PDB-style files is described here.)

Timeline for d3dy3v_: