SCOPe 2.04: Domain d3dodb_: 3dod B:

Lineage for d3dodb_ (3dod B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.0: automated matches [191328] (1 protein)
   not a true family

6. Protein automated matches [190151] (83 species)
   not a true protein

7. Species Bacillus subtilis [TaxId:1423] [188928] (1 PDB entry)

8. Domain d3dodb_: 3dod B: [174095]
   automated match to d1s0aa_
   complexed with plp

Details for d3dodb_

PDB Entry: 3dod, 1.9 Å

PDB Description: Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis

PDB Compounds: (B:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

SCOPe Domain Sequences for d3dodb_:

Sequence, based on SEQRES records:

>d3dodb_ c.67.1.0 (B:) automated matches {Bacillus subtilis [TaxId: 1423]}
dliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrkk
elddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialkm
afqywknigkpekqkfiamkngyhgdtigavsvgsielfhhvygplmfesykapipyvyr
sesgdpdecrdqclrelaqlleehheeiaalsiesmvqgasgmivmpegylagvrelctt
ydvlmivdevatgfgrtgkmfacehenvqpdlmaagkgitggylpiavtfatediykafy
ddyenlktffhghsytgnqlgcavalenlalfeseniveqvaekskklhfllqdlhalph
vgdirqlgfmcgaelvrsketkepypadrrigykvslkmrelgmltrplgdviaflppla
staeelsemvaimkqaihevtsled

Sequence, based on observed residues (ATOM records):

>d3dodb_ c.67.1.0 (B:) automated matches {Bacillus subtilis [TaxId: 1423]}
dliekskkhlwlpftqmkdydenpliiesgtgikvkdingkeyydgfssvwlnvhghrkk
elddaikkqlgkiahstllgmtnvpatqlaetlidispkkltrvfysdsgaeameialkm
afqywknigkpekqkfiamksykapipyvyrsesgdpdecrdqclrelaqlleehheeia
alsiesmvqgasgmivmpegylagvrelcttydvlmivdevatgfgrtgkmfacehenvq
pdlmaagkgitggylpiavtfatediykafyddyenlktffhghsytgnqlgcavalenl
alfeseniveqvaekskklhfllqdlhalphvgdirqlgfmcgaelvrsketkepypadr
rigykvslkmrelgmltrplgdviaflpplastaeelsemvaimkqaihevtsled

Timeline for d3dodb_:

• d3dodb_ first appeared in SCOPe 2.01
  
• d3dodb_ appears in SCOPe 2.03
  
• d3dodb_ appears in SCOPe 2.05
  
• d3dodb_ appears in the current release, SCOPe 2.08