Lineage for d1yrqi_ (1yrq I:)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3018743Fold e.18: HydB/Nqo4-like [56761] (1 superfamily)
    3 domains: (1) all-alpha; (2&3) alpha+beta
  4. 3018744Superfamily e.18.1: HydB/Nqo4-like [56762] (3 families) (S)
  5. 3018745Family e.18.1.1: Nickel-iron hydrogenase, large subunit [56763] (2 proteins)
  6. 3018776Protein automated matches [190109] (8 species)
    not a true protein
  7. 3018817Species Desulfovibrio fructosovorans [TaxId:878] [188150] (12 PDB entries)
  8. 3018843Domain d1yrqi_: 1yrq I: [162293]
    Other proteins in same PDB: d1yrqa_, d1yrqb_, d1yrqc_, d1yrqd_, d1yrqf_, d1yrqg_
    automated match to d1e3db_
    complexed with f3s, fco, mg, ni, sf4

Details for d1yrqi_

PDB Entry: 1yrq (more details), 2.1 Å

PDB Description: structure of the ready oxidized form of [nife]-hydrogenase
PDB Compounds: (I:) Periplasmic [NiFe] hydrogenase Large subunit

SCOPe Domain Sequences for d1yrqi_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1yrqi_ e.18.1.1 (I:) automated matches {Desulfovibrio fructosovorans [TaxId: 878]}
kptpqstftgpivvdpitrieghlrimvevengkvkdawsssqlfrgleiilkgrdprda
qhftqracgvctyvhalassrcvddavkvsipanarmmrnlvmasqylhdhlvhfyhlha
ldwvdvtaalkadpnkaaklaasiaparpgnsakalkavqdklkafvesgqlgiftnayf
lgghkayylppevnliatahylealhmqvkaasamailggknphtqftvvggcsnyqglt
kdplanylalskevcqfvnecyipdllavagfykdwggiggtsnylafgefatddsspsk
hlatsqfpsgvitgrdlgkvdnvdlgaiyedvkyswyapggdgkhpydgvtdpkytkldd
kdhyswmkaprykgkamevgplartfiayakgqpdfkkvvdmvlgklsvpatalhstlgr
taargietaivcanmekwikemadsgakdntlcakwempeeskgvgladaprgalshwir
ikgkkidnfqlvvpstwnlgprgaqgdkspveealigtpiadpkrpveilrtvhafdpci
acgvh

SCOPe Domain Coordinates for d1yrqi_:

Click to download the PDB-style file with coordinates for d1yrqi_.
(The format of our PDB-style files is described here.)

Timeline for d1yrqi_: