SCOPe 2.07: Protein: GGDEF family protein VP0354

Lineage for Protein: GGDEF family protein VP0354

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.110: Profilin-like [55769] (10 superfamilies)
core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
Superfamily d.110.6: Sensory domain-like [103190] (5 families)
alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
Family d.110.6.2: YkuI C-terminal domain-like [143732] (2 proteins)
PfamB PB021678
Protein GGDEF family protein VP0354 [160677] (1 species)
N-terminal region, consist of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region

Species:

Vibrio parahaemolyticus [TaxId:670] [160678] (3 PDB entries)
Uniprot Q87SR8 207-299! Uniprot Q87SR8 35-206
1. Domains for 2p7j:
  1. Domain d2p7ja1: 2p7j A:181-273 [149287]
    complexed with acy, na, so4
  2. Domain d2p7ja2: 2p7j A:9-180 [149288]
    complexed with acy, na, so4
  3. Domain d2p7jb1: 2p7j B:181-281 [149289]
    automated match to d2p7ja1
    complexed with acy, na, so4
  4. Domain d2p7jb2: 2p7j B:8-180 [149290]
    automated match to d2p7ja2
    complexed with acy, na, so4
2. Domains for 3lid:
  1. Domain d3lida1: 3lid A:33-206 [232842]
    automated match to d2p7jb2
    complexed with cl, edo, po4
  2. Domain d3lida2: 3lid A:207-311 [232845]
    automated match to d2p7jb1
    complexed with cl, edo, po4
  3. Domain d3lidb1: 3lid B:36-206 [239430]
    automated match to d3lida1
    complexed with cl, edo, po4
  4. Domain d3lidb2: 3lid B:207-311 [239431]
    automated match to d3lida2
    complexed with cl, edo, po4
3. Domains for 3lie:
  1. Domain d3liea1: 3lie A:30-206 [232843]
    automated match to d2p7jb2
    complexed with mg
  2. Domain d3liea2: 3lie A:207-302 [232844]
    automated match to d2p7jb1
    complexed with mg
  3. Domain d3lieb1: 3lie B:33-206 [239432]
    automated match to d3liea1
    complexed with mg
  4. Domain d3lieb2: 3lie B:207-300 [239433]
    automated match to d3liea2
    complexed with mg

More info for Protein GGDEF family protein VP0354 from d.110.6.2: YkuI C-terminal domain-like

Timeline for Protein GGDEF family protein VP0354 from d.110.6.2: YkuI C-terminal domain-like:

Protein GGDEF family protein VP0354 from d.110.6.2: YkuI C-terminal domain-like first appeared in SCOP 1.75
Protein GGDEF family protein VP0354 from d.110.6.2: YkuI C-terminal domain-like appears in SCOPe 2.06
Protein GGDEF family protein VP0354 from d.110.6.2: YkuI C-terminal domain-like does not appear in SCOPe 2.08