SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family d.17.4.26: VirB8-like

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2161468Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2161993Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2162681Family d.17.4.26: VirB8-like [160029] (2 protein domains)
    Pfam PF04335

Protein Domains:

  1. 2162682Type IV secretion system protein VirB8 [160030] (2 species)
    1. 2162683Species Agrobacterium tumefaciens [TaxId:358] [160031] (1 PDB entry)
      Uniprot P17798 92-231
    2. 2162685Species Brucella melitensis [TaxId:29459] [160032] (3 PDB entries)
      Uniprot Q7CEG3 97-235
  2. 2162701automated matches [190553] (2 species)
    not a true protein
    1. 2162702Species Agrobacterium tumefaciens [TaxId:358] [187535] (1 PDB entry)
    2. 2287043Species Brucella suis [TaxId:204722] [330344] (1 PDB entry)

More info for Family d.17.4.26: VirB8-like

Timeline for Family d.17.4.26: VirB8-like: