SCOPe 2.01: Family b.38.1.6: YgdI/YgdR-like

Lineage for Family b.38.1.6: YgdI/YgdR-like

1. Root: SCOPe 2.01

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.38: Sm-like fold [50181] (5 superfamilies)
   core: barrel, open; n*=4, S*=8; meander; SH3-like topology

4. Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families)

5. Family b.38.1.6: YgdI/YgdR-like [159052] (7 proteins)
   Pfam PF06004; DUF903, putative lipoprotein; both homohexameric and homoheptameric ring assemblies are observed in the crystals

Proteins:

1. Hypothetical lipoprotein YgdR [159063] (1 species)

   • Species Escherichia coli [TaxId:562] [159064] (1 PDB entry)
     Uniprot P65294 23-72

2. Putative outer membrane lipoprotein STM1585 [159059] (1 species)

   • Species Salmonella typhimurium [TaxId:90371] [159060] (1 PDB entry)
     Uniprot Q7CQI7 22-73

3. Uncharacterized protein ECA1013 [159057] (1 species)

   • Species Erwinia carotovora [TaxId:554] [159058] (1 PDB entry)
     Uniprot Q6D8G1 21-73

4. Uncharacterized protein PSPPH2109 [159061] (1 species)

   • Species Pseudomonas syringae [TaxId:317] [159062] (1 PDB entry)
     Uniprot Q48JU9 23-74

5. Uncharacterized protein SO0963 [159053] (1 species)

   • Species Shewanella oneidensis [TaxId:70863] [159054] (1 PDB entry)
     Uniprot Q8EI81 25-76

6. Uncharacterized protein YgdI [159055] (1 species)

   • Species Salmonella typhimurium [TaxId:90371] [159056] (1 PDB entry)
     Uniprot Q7CPV8 23-75

7. automated matches [191017] (1 species)
   not a true protein

   • Species Escherichia coli K-12 [TaxId:83333] [188787] (1 PDB entry)

More info for Family b.38.1.6: YgdI/YgdR-like

Timeline for Family b.38.1.6: YgdI/YgdR-like:

• Family b.38.1.6: YgdI/YgdR-like first appeared in SCOP 1.75
  
• Family b.38.1.6: YgdI/YgdR-like appears in SCOPe 2.02
  
• Family b.38.1.6: YgdI/YgdR-like appears in the current release, SCOPe 2.08