Lineage for Species: Escherichia coli [TaxId: 562]

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 929299Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 929300Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 929301Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 930396Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 930469Species Escherichia coli [TaxId:562] [158860] (3 PDB entries)

PDB entries in Species: Escherichia coli [TaxId: 562]:

  1. Domain(s) for 2r9h:
    1. 930476Domain d2r9hd1: 2r9h D:1-105 [151784]
      Other proteins in same PDB: d2r9hd2, d2r9hf2
      automatically matched to d1dqdl1
      complexed with cl; mutant
    2. 930477Domain d2r9hf1: 2r9h F:1-105 [151786]
      Other proteins in same PDB: d2r9hd2, d2r9hf2
      automatically matched to d1dqdl1
      complexed with cl; mutant
  2. Domain(s) for 2v7n:
    1. 930470Domain d2v7na1: 2v7n A:1-148 [152724]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    2. 930471Domain d2v7nc1: 2v7n C:1-148 [152726]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    3. 930472Domain d2v7ne1: 2v7n E:1-148 [152728]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
    4. 930473Domain d2v7ng1: 2v7n G:1-148 [152730]
      Other proteins in same PDB: d2v7na2, d2v7nc2, d2v7ne2, d2v7ng2
      automatically matched to d1rhha1
  3. Domain(s) for 3det:
    1. 930474Domain d3detd1: 3det D:1-105 [157596]
      Other proteins in same PDB: d3detd2, d3detf2
      automatically matched to d1dqdl1
      mutant
    2. 930475Domain d3detf1: 3det F:1-105 [157598]
      Other proteins in same PDB: d3detd2, d3detf2
      automatically matched to d1dqdl1
      mutant

More info for Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa

Timeline for Species Escherichia coli [TaxId:562] from b.1.1.1 Immunoglobulin light chain kappa variable domain, VL-kappa: