SCOPe 2.01: Domain d3dsub_: 3dsu B:

Lineage for d3dsub_ (3dsu B:)

1. Root: SCOPe 2.01

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.102: alpha/alpha toroid [48207] (6 superfamilies)
   multihelical; up to seven alpha-hairpins are arranged in closed circular array; there may be sequence similarities between different superfamilies

4. Superfamily a.102.4: Terpenoid cyclases/Protein prenyltransferases [48239] (4 families)

5. Family a.102.4.3: Protein prenyltransferases [48246] (3 proteins)

6. Protein Rab geranylgeranyltransferase, beta subunit [48249] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [48250] (14 PDB entries)

8. Domain d3dsub_: 3dsu B: [157843]
   automated match to d1dceb_
   complexed with ca, fpp, zn

Details for d3dsub_

PDB Entry: 3dsu, 1.9 Å

PDB Description: crystal structure of rabggtase(delta lrr; delta ig)in complex with farnesyl pyrophosphate

PDB Compounds: (B:) Geranylgeranyl transferase type-2 subunit beta

SCOPe Domain Sequences for d3dsub_:

Sequence, based on SEQRES records:

>d3dsub_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskkddyeycmseylrmsgvywgltvmdlmgqlh
rmnkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvq
slqkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcr
pgseshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcysww
vlaslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgee
qikpvspvfcmpeevlqrvnvqpelvs

Sequence, based on observed residues (ATOM records):

>d3dsub_ a.102.4.3 (B:) Rab geranylgeranyltransferase, beta subunit {Norway rat (Rattus norvegicus) [TaxId: 10116]}
qkdvtiksdapdtlllekhadyiasygskkyeycmseylrmsgvywgltvmdlmgqlhrm
nkeeilvfikscqhecggvsasighdphllytlsavqiltlydsihvinvdkvvayvqsl
qkedgsfagdiwgeidtrfsfcavatlallgkldainvekaiefvlscmnfdggfgcrpg
seshagqiycctgflaitsqlhqvnsdllgwwlcerqlpsgglngrpeklpdvcyswwvl
aslkiigrlhwidreklrsfilacqdeetggfadrpgdmvdpfhtlfgiaglsllgeeqi
kpvspvfcmpeevlqrvnvqpelvs

Timeline for d3dsub_:

• d3dsub_ first appeared in SCOP 1.75, called d3dsub1
  
• d3dsub_ appears in SCOPe 2.02
  
• d3dsub_ appears in the current release, SCOPe 2.08