Lineage for d3bkyh1 (3bky H:1-122)

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1287433Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1287434Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1287435Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1287638Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1287816Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (33 PDB entries)
    Uniprot Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
  8. 1287872Domain d3bkyh1: 3bky H:1-122 [155372]
    Other proteins in same PDB: d3bkyh2
    automatically matched to d1w72h1

Details for d3bkyh1

PDB Entry: 3bky (more details), 2.61 Å

PDB Description: crystal structure of chimeric antibody c2h7 fab in complex with a cd20 peptide
PDB Compounds: (H:) the Fab fragment of chimeric 2H7, heavy chain

SCOPe Domain Sequences for d3bkyh1:

Sequence; same for both SEQRES and ATOM records: (download)

>d3bkyh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

SCOPe Domain Coordinates for d3bkyh1:

Click to download the PDB-style file with coordinates for d3bkyh1.
(The format of our PDB-style files is described here.)

Timeline for d3bkyh1: