Lineage for d2vwja1 (2vwj A:1-347)

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1372364Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 1373755Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 1374321Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (16 proteins)
    contains Pfam PF00929
  6. 1374322Protein Exonuclease domain of family B DNA polymerases [53125] (8 species)
    elaborated with additional structures and the N-terminal subdomain
  7. 1374409Species Thermococcus gorgonarius [TaxId:71997] [53128] (3 PDB entries)
    additional N-terminal subdomain contains rudimental OB-fold but complete ferredoxin-like fold
  8. 1374412Domain d2vwja1: 2vwj A:1-347 [153675]
    Other proteins in same PDB: d2vwja2
    automatically matched to d1qqca1
    complexed with k

Details for d2vwja1

PDB Entry: 2vwj (more details), 2.78 Å

PDB Description: uracil recognition in archaeal dna polymerases captured by x-ray crystallography.
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2vwja1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2vwja1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Thermococcus gorgonarius [TaxId: 71997]}
mildtdyitedgkpvirifkkengefkidydrnfepyiyallkddsaiedvkkitaerhg
ttvrvvraekvkkkflgrpievwklyfthpqdvpairdkikehpavvdiyeydipfakry
lidkglipmegdeelkmlafdietlyhegekfaegpilmisyadeegarvitwrnidlpy
vdvvstekemikrflkvvkekdpdvlityngdnfafaylkkrseklgvkfilgregsepk
iqrmgdrfavevkgrihfdlypvirrtinlptytleavyeaifgqpkekvyaeeiaqawe
tgeglervarysmedakvtyelgkeffpmeaqlsrlvgqslwdvsrs

SCOPe Domain Coordinates for d2vwja1:

Click to download the PDB-style file with coordinates for d2vwja1.
(The format of our PDB-style files is described here.)

Timeline for d2vwja1: