SCOPe 2.07: Domain d2vrha1: 2vrh A:248-431

Lineage for d2vrha1 (2vrh A:248-431)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.223: Triger factor/SurA peptide-binding domain-like [109997] (1 superfamily)
   multihelical; irregular array of long and short helices

4. Superfamily a.223.1: Triger factor/SurA peptide-binding domain-like [109998] (3 families)
   there are sequence and functional similarities between the families, but their structural similarity is obscured by conformational flexibility (in the TF family)

5. Family a.223.1.1: TF C-terminus [109999] (1 protein)
   Pfam PF05698; includes the upstream linker region not covered by the Pfam model

6. Protein Trigger factor, C-terminal domain [110000] (2 species)

7. Species Escherichia coli [TaxId:562] [110001] (2 PDB entries)
   Uniprot P22257

8. Domain d2vrha1: 2vrh A:248-431 [153506]
   Other proteins in same PDB: d2vrha2, d2vrha3, d2vrhb1, d2vrhc1, d2vrhd1
   automatically matched to d1w26a1
   protein/RNA complex

Details for d2vrha1

PDB Entry: 2vrh

PDB Description: structure of the e. coli trigger factor bound to a translating ribosome

PDB Compounds: (A:) Trigger Factor

SCOPe Domain Sequences for d2vrha1:

Sequence; same for both SEQRES and ATOM records:

>d2vrha1 a.223.1.1 (A:248-431) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
ltaefikrfgvedgsveglraevrknmerelksairnrvksqaieglvkandidvpaali
dseidvlrrqaaqrfggnekqalelprelfeeqakrrvvvglllgevirtnelkadeerv
kglieemasayedpkeviefysknkelmdnmrnvaleeqaveavlakakvtekettfnel
mnqq

Timeline for d2vrha1:

• d2vrha1 first appeared in SCOP 1.75
  
• d2vrha1 appears in SCOPe 2.06
  
• d2vrha1 appears in the current release, SCOPe 2.08