SCOPe 2.02: Domain d2vnud4: 2vnu D:495-910

Lineage for d2vnud4 (2vnu D:495-910)

1. Root: SCOPe 2.02

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.40: OB-fold [50198] (16 superfamilies)
   barrel, closed or partly opened n=5, S=10 or S=8; greek-key

4. Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families)

5. Family b.40.4.16: RNB domain-like [159112] (3 proteins)
   Pfam PF00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site

6. Protein Exosome complex exonuclease RRP44 [159113] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159114] (1 PDB entry)
   Uniprot Q08162 495-910

8. Domain d2vnud4: 2vnu D:495-910 [153347]
   Other proteins in same PDB: d2vnud1, d2vnud2, d2vnud3
   protein/RNA complex; complexed with 1pe, mg, na

Details for d2vnud4

PDB Entry: 2vnu, 2.3 Å

PDB Description: crystal structure of sc rrp44

PDB Compounds: (D:) exosome complex exonuclease rrp44

SCOPe Domain Sequences for d2vnud4:

Sequence; same for both SEQRES and ATOM records:

>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
fskkvleclpaeghdwkaptklddpeavskdplltkrkdlrdklicsidppgcvdindal
hakklpngnwevgvhiadvthfvkpgtaldaegaargtsvylvdkridmlpmllgtdlcs
lkpyvdrfafsviwelddsanivnvnfmksvirsreafsyeqaqlriddktqndeltmgm
rallklsvklkqkrleagalnlaspevkvhmdsetsdpneveikkllatnslveefmlla
nisvarkiydafpqtamlrrhaappstnfeilnemlntrknmsislesskaladsldrcv
dpedpyfntlvrimstrcmmaaqyfysgaysypdfrhyglavdiythftspirrycdvva
hrqlagaigyeplslthrdknkmdmicrninrkhrnaqfagrasieyyvgqvmrnn

Timeline for d2vnud4:

• d2vnud4 first appeared in SCOP 1.75
  
• d2vnud4 appears in SCOPe 2.01
  
• d2vnud4 appears in SCOPe 2.03
  
• d2vnud4 appears in the current release, SCOPe 2.08