SCOPe 2.07: Domain d2vhnm1: 2vhn M:1-136

Lineage for d2vhnm1 (2vhn M:1-136)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.41: alpha/beta-Hammerhead [54664] (5 superfamilies)
   core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids

4. Superfamily d.41.4: Ribosomal protein L16p/L10e [54686] (2 families)

5. Family d.41.4.2: Ribosomal protein L16p [117888] (1 protein)
   Pfam PF00252

6. Protein Ribosomal protein L16p [117889] (4 species)

7. Species Escherichia coli [TaxId:562] [143200] (29 PDB entries)
   Uniprot P0ADY7 1-136

8. Domain d2vhnm1: 2vhn M:1-136 [153108]
   Other proteins in same PDB: d2vhn01, d2vhn11, d2vhn31, d2vhn41, d2vhnc1, d2vhnc2, d2vhnd1, d2vhne1, d2vhnf1, d2vhng1, d2vhng2, d2vhnh1, d2vhnh2, d2vhni1, d2vhni2, d2vhnj1, d2vhnk1, d2vhnl1, d2vhnn1, d2vhno1, d2vhnp1, d2vhnq1, d2vhnr1, d2vhns1, d2vhnt1, d2vhnu1, d2vhnv1, d2vhnw1, d2vhnx1, d2vhny1, d2vhnz1
   protein/RNA complex; complexed with mg
   protein/RNA complex; complexed with mg

Details for d2vhnm1

PDB Entry: 2vhn, 3.74 Å

PDB Description: Structure of PDF binding helix in complex with the ribosome. (Structure 2 of 4)

PDB Compounds: (M:) 50S ribosomal protein L16

SCOPe Domain Sequences for d2vhnm1:

Sequence; same for both SEQRES and ATOM records:

>d2vhnm1 d.41.4.2 (M:1-136) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavrmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

Timeline for d2vhnm1:

• d2vhnm1 first appeared in SCOP 1.75
  
• d2vhnm1 appears in SCOPe 2.06
  
• d2vhnm1 appears in the current release, SCOPe 2.08