SCOPe 2.06: Domain d2vgnb2: 2vgn B:136-277

Lineage for d2vgnb2 (2vgn B:136-277)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.4: Translational machinery components [53137] (3 families)

5. Family c.55.4.2: ERF1/Dom34 middle domain-like [53143] (3 proteins)
   automatically mapped to Pfam PF03464

6. Protein Dom34 [159645] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159646] (2 PDB entries)
   Uniprot P33309 136-277

8. Domain d2vgnb2: 2vgn B:136-277 [153044]
   Other proteins in same PDB: d2vgna1, d2vgna3, d2vgnb1, d2vgnb3
   automated match to d2vgma2
   complexed with gol, po4

Details for d2vgnb2

PDB Entry: 2vgn, 2.5 Å

PDB Description: structure of s. cerevisiae dom34, a translation termination-like factor involved in rna quality control pathways and interacting with hbs1 (selenomet-labeled protein)

PDB Compounds: (B:) dom34

SCOPe Domain Sequences for d2vgnb2:

Sequence, based on SEQRES records:

>d2vgnb2 c.55.4.2 (B:136-277) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ieyksdtaavvlqegiahvclvtssstilkqkieysmpkkkrttdvlkfdektekfykai
ysamkkdlnfdklktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgy
lqginevlknplyasklqdtky

Sequence, based on observed residues (ATOM records):

>d2vgnb2 c.55.4.2 (B:136-277) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ieyksdtaavvlqegiahvclvtssstilkqkieyvlkfdektekfykaiysamkkdlnf
dklktiilcspgfyakilmdkifqyaeeehnkkildnkgmffiahcstgylqginevlkn
plyasklqdtky

Timeline for d2vgnb2:

• d2vgnb2 first appeared in SCOP 1.75
  
• d2vgnb2 appears in SCOPe 2.05
  
• d2vgnb2 appears in SCOPe 2.07
  
• d2vgnb2 appears in the current release, SCOPe 2.08