Lineage for d2vgna2 (2vgn A:136-277)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2495356Superfamily c.55.4: Translational machinery components [53137] (3 families) (S)
  5. 2495520Family c.55.4.2: ERF1/Dom34 middle domain-like [53143] (3 proteins)
    automatically mapped to Pfam PF03464
  6. 2495524Protein Dom34 [159645] (1 species)
  7. 2495525Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [159646] (2 PDB entries)
    Uniprot P33309 136-277
  8. 2495526Domain d2vgna2: 2vgn A:136-277 [153041]
    Other proteins in same PDB: d2vgna1, d2vgna3, d2vgnb1, d2vgnb3
    automated match to d2vgma2
    complexed with gol, po4

Details for d2vgna2

PDB Entry: 2vgn (more details), 2.5 Å

PDB Description: structure of s. cerevisiae dom34, a translation termination-like factor involved in rna quality control pathways and interacting with hbs1 (selenomet-labeled protein)
PDB Compounds: (A:) dom34

SCOPe Domain Sequences for d2vgna2:

Sequence, based on SEQRES records: (download)

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

Sequence, based on observed residues (ATOM records): (download)

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOPe Domain Coordinates for d2vgna2:

Click to download the PDB-style file with coordinates for d2vgna2.
(The format of our PDB-style files is described here.)

Timeline for d2vgna2: