SCOPe 2.03: Domain d2qexl1: 2qex L:1-150

Lineage for d2qexl1 (2qex L:1-150)

1. Root: SCOPe 2.03

2. Class i: Low resolution protein structures [58117] (25 folds)

3. Fold i.1: Ribosome and ribosomal fragments [58118] (1 superfamily)

4. Superfamily i.1.1: Ribosome and ribosomal fragments [58119] (3 families)

5. Family i.1.1.2: Large subunit [58124] (1 protein)

6. Protein 50S subunit [58125] (6 species)

7. Species Haloarcula marismortui [TaxId:2238] [58126] (20 PDB entries)

8. Domain d2qexl1: 2qex L:1-150 [150700]
   Other proteins in same PDB: d2qex21, d2qexb1, d2qexc1, d2qexf1, d2qexg1, d2qexh1, d2qexi1, d2qexk1, d2qexm1, d2qexp1, d2qexr1, d2qexs1, d2qexy1, d2qexz1
   automatically matched to d1w2bk_
   complexed with cd, cl, k, mg, na, neg

Details for d2qexl1

PDB Entry: 2qex, 2.9 Å

PDB Description: negamycin binds to the wall of the nascent chain exit tunnel of the 50s ribosomal subunit

PDB Compounds: (L:) 50S ribosomal protein L15P

SCOPe Domain Sequences for d2qexl1:

Sequence, based on SEQRES records:

>d2qexl1 i.1.1.2 (L:1-150) 50S subunit {Haloarcula marismortui [TaxId: 2238]}
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrheltl
iaddfsegarekvegaggsveltdlgeerq

Sequence, based on observed residues (ATOM records):

>d2qexl1 i.1.1.2 (L:1-150) 50S subunit {Haloarcula marismortui [TaxId: 2238]}
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaefrvdvrdvveeaddadyvkvlgagqvrheltliaddf
segarekvegaggsveltdlgeerq

Timeline for d2qexl1:

• d2qexl1 first appeared in SCOP 1.75
  
• d2qexl1 appears in SCOPe 2.02
  
• d2qexl1 appears in SCOPe 2.04
  
• d2qexl1 appears in the current release, SCOPe 2.08